Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Dirk Eddelbuettel
On 3 April 2009 at 06:35, Jerome BENOIT wrote: | It appeared that the file /etc/openmpi/openmpi-mca-params.conf on node green was the only one | into the cluster to contain the line | | btl_tcp_port_min_v4 = 49152 Great -- so can we now put your claims of 'the Debian package is broken' to rest

Re: [OMPI users] Issues on install 1.3.1

2009-04-02 Thread Iain Bason
On Apr 2, 2009, at 2:45 PM, Gus Correa wrote: Sorry, I don't have an answer about performance. You may need to ask somebody else or google around about the relative performance of 32-bit vs. 64-bit mode. It is worth trying 64-bit. The performance is going to depend on the program. Since 6

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Jeff Squyres
On Apr 2, 2009, at 6:35 PM, Jerome BENOIT wrote: It appeared that the file /etc/openmpi/openmpi-mca-params.conf on node green was the only one into the cluster to contain the line btl_tcp_port_min_v4 = 49152 Great -- glad you found the issue! Once the this line commented, the tests sugges

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Jerome BENOIT
Hello List ! It appeared that the file /etc/openmpi/openmpi-mca-params.conf on node green was the only one into the cluster to contain the line btl_tcp_port_min_v4 = 49152 Once the this line commented, the tests suggest below, and the sbatch script previously emailed, work. Now, if I put the

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Jerome BENOIT
Hi ! Dirk Eddelbuettel wrote: On 3 April 2009 at 03:33, Jerome BENOIT wrote: | The above submission works the same on my clusters. | But in fact, my issue involve interconnection between the nodes of the clusters: | in the above examples involve no connection between nodes. | | My cluster is a

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Dirk Eddelbuettel
On 3 April 2009 at 03:33, Jerome BENOIT wrote: | The above submission works the same on my clusters. | But in fact, my issue involve interconnection between the nodes of the clusters: | in the above examples involve no connection between nodes. | | My cluster is a cluster of quadcore computers:

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Jerome BENOIT
Hi Again ! Dirk Eddelbuettel wrote: Works for me (though I prefer salloc), suggesting that you did something to your network topology or Open MPI configuration: :~$ cat /tmp/jerome_hw.c // mpicc -o phello phello.c // mpirun -np 5 phello #include #include #include int main(int narg, char

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Jerome BENOIT
I am very sorry for may bad behaviour: I will try to be less confused the next time. Thanks a lot for the outputs and the hints, Jerome Dirk Eddelbuettel wrote: [ It is considered bad form to publically reply to a private message. What I had sent you earlier was a private mail. ] On 3 April 2

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Dirk Eddelbuettel
[ It is considered bad form to publically reply to a private message. What I had sent you earlier was a private mail. ] On 3 April 2009 at 02:41, Jerome BENOIT wrote: | | Original Message | Subject: Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13) | Date: F

Re: [OMPI users] Issues on install 1.3.1

2009-04-02 Thread Gus Correa
Hi Francesco, list I was thinking of compatibility (and consistency) rather than of performance. I don't know about Debian, but on CentOS 5.2 x86_64 the 64-bit libnuma library lives at /usr/lib64, and the 32-bit version on /usr/lib. If you are trying to build 64-bit OpenMPI libraries with libnum

Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Jerome BENOIT
Original Message Subject: Re: [OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13) List-Post: users@lists.open-mpi.org Date: Fri, 03 Apr 2009 02:41:01 +0800 From: Jerome BENOIT Reply-To: ml.jgmben...@mailsnare.net To: Dirk Eddelbuettel CC: ml.jgmben...@mailsnare.

[OMPI users] openmpi 1.3.1: bind() failed: Permission denied (13)

2009-04-02 Thread Jerome BENOIT
Hello List, I am trying to fix the following issue (with firewall off): [green][[32664,1],5][../../../../../../ompi/mca/btl/tcp/btl_tcp_component.c:596:mca_btl_tcp_component_create_listen] bind() failed: Permission denied (13) I have tried with new kernel without security features, but witho

Re: [OMPI users] Issues on install 1.3.1

2009-04-02 Thread Francesco Pietra
Gustavo: Does this imply that a compilation with "--with-libnuma=/usr/lib64" may afford better performance? Am asking that because in the meantime I have taken previous compilation of openmpi-1.2.6 and use it (one disk of raid1 died and I changed both with larger ones). If better performance I can

Re: [OMPI users] Issues on install 1.3.1

2009-04-02 Thread Gus Correa
Hi Francesco, list Francesco: Besides the typo that Jeff found on your CXX definition, I would guess you want --with-libnuma=/usr/lib64 (since your machine is amd64, and you are using the 64-bit Intel compilers: cce, fce). That is instead of --with-libnuma=/usr/lib (32-bit). The /usr/lib64 path a

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread Elvedin Trnjanin
Eugene, This is a joke, right? OpenMPI has had that since the 1.2 line. Eugene Loh wrote: Ah. George, you should have thought about that. I understand your eagerness to share this exciting news, but perhaps an April-1st announcement detracted from the seriousness of this grand development.

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread Eugene Loh
Ah. George, you should have thought about that. I understand your eagerness to share this exciting news, but perhaps an April-1st announcement detracted from the seriousness of this grand development. Here's another desirable MPI feature. People talk about "error detection/correction". We

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread McCalla, Mac
Well done, well done!. As always your contributions are much appreciated. Mac McCalla Houston -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of George Bosilca Sent: Wednesday, April 01, 2009 5:04 PM To: Open MPI MPI Developers; Open M

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread Douglas Guptill
On Wed, Apr 01, 2009 at 06:04:15PM -0400, George Bosilca wrote: > The Open MPI Team, representing a consortium of bailed-out banks, car > manufacturers, and insurance companies, is pleased to announce the > release of the "unbreakable" / bug-free version Open MPI 2009, > (expected to be available

Re: [OMPI users] Issues on install 1.3.1

2009-04-02 Thread Jeff Squyres
On Apr 2, 2009, at 7:21 AM, Francesco Pietra wrote: Hi: With debian linux amd64 lenny I tried to install openmpi-1.3.1 instead of using the executables openmpi-1.2.6 of previous disks. I configured as for 1.2.6 (wrong ?) CC=/opt/intel/cce/10.1.015/bin/icc CXX=opt/intel/cce/10.1.015/bin/icpc

Re: [OMPI users] OpenMPI 1.3.1 + BLCR build problem

2009-04-02 Thread Dave Love
Josh Hursey writes: > Thanks. I'll fix this and post a new draft soon (I have a few other > items to put in there anyway). One thing to note in the mean time is that building with BLCR failed for me with the PGI compiler with a link-time message about a bad file format. I assume it's a libtool

Re: [OMPI users] Strange behaviour of SGE+OpenMPI

2009-04-02 Thread Dave Love
I wrote: > E.g. on > 8-core nodes, if you submit a 16-process job, there are four cores left > over on the relevant nodes which might get something else scheduled on > them. Of course, that doesn't make much sense because I thought `12' and typed `16' for some reason... Thanks to Rolf for off-li

[OMPI users] Issues on install 1.3.1

2009-04-02 Thread Francesco Pietra
Hi: With debian linux amd64 lenny I tried to install openmpi-1.3.1 instead of using the executables openmpi-1.2.6 of previous disks. I configured as for 1.2.6 (wrong ?) CC=/opt/intel/cce/10.1.015/bin/icc CXX=opt/intel/cce/10.1.015/bin/icpc F77=/opt/intel/fce/10.1.015/bin/ifort FC=/opt/intel/fce/10

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread Anthony Thevenin
does anymone think of an April fool's day??? ** Anthony THEVENIN Research Engineer PALM project Global Change And Climate Modelling team CERFACS 42, Avenue G. Coriolis 31057 Toulouse (FRANCE) Tel: +33(0)561 19 30 73 Fax: +33(0)561 19 30 00 http://www.cerfacs.fr/ http://www.cerfacs.f

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread Jeff Layton
I'm still looking for the new "-11" option that will allow OpenMPI compiled code to run even faster. I'm hoping that option makes it in soon (isn't it part of the 11.7 MPI standard?) Jeff From: George Bosilca To: Open MPI MPI Developers ; Open MPI Users S

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread Gabriele Fatigati
Great! I'll try it as soon as possible :) 2009/4/2 George Bosilca : > The Open MPI Team, representing a consortium of bailed-out banks, car > manufacturers, and insurance companies, is pleased to announce the > release of the "unbreakable" / bug-free version Open MPI 2009, > (expected to be avail

Re: [OMPI users] Open MPI 2009 released

2009-04-02 Thread Nicolas Deladerriere
What a wonderfull implementation 2009/4/2 Damien Hocking > Outstanding. I'll have two. > > Damien > > > George Bosilca wrote: > >> The Open MPI Team, representing a consortium of bailed-out banks, car >> manufacturers, and insurance companies, is pleased to announce the >> release of the "

Re: [OMPI users] Beginner's question: how to avoid a running mpi job hang if host or network failed or orted deamon killed?

2009-04-02 Thread Guanyinzhu
Problem resolved, I set ConnectTimeout N in /etc/ssh/ssd_config , mpirun exit after N seconds. thanks a lot! From: buptzh...@hotmail.com To: us...@open-mpi.org List-Post: users@lists.open-mpi.org Date: Thu, 2 Apr 2009 11:05:25 +0800 Subject: Re: [OMPI users] Beginner's question: how to av