Re: [OMPI users] Using compiler_args in wrappers with Portland Group Compilers

2009-01-30 Thread Wayne Gilmore
>You should be able to include options just as you want them to appear on >the command line. Can you send me both the .txt file you edited as well >as the output of mpicc -showme (or whichever compiler you are testing)? > >Thanks, > >Brian For a regular 64 bit build: (no problems here, works fine

Re: [OMPI users] Installing OpenMPI for Intel Fortran on OSX??

2009-01-30 Thread Goldstein, Bruce E
Please ignore request for help on OpenMPI and Intel Fortran a few minutes ago, the magic incantation was in the FAQ on building, but I had been elsewhere in the FAQ. -bg

[OMPI users] Installing OpenMPI for Intel Fortran on OSX??

2009-01-30 Thread Goldstein, Bruce E
I OSX 10.5, have Intel Fortran, but I do not have Intel C, so need to compile OpenMPI using gcc, which is supposed to work. When I run the configure script I get an error message about configure: error: C and Fortran 77 compilers are not link compatible. Can not continue. I am guessing that the

Re: [OMPI users] Open MPI 1.3 segfault on amd64 with Rmpi

2009-01-30 Thread Dirk Eddelbuettel
On 30 January 2009 at 16:15, Jeff Squyres wrote: | On Jan 26, 2009, at 3:33 PM, Dirk Eddelbuettel wrote: | | > Gdb doesn't want to step into the Open MPI code; I used debugging | > symbols for | > both R and Open MPI that are available via -dbg packages with the | > debugging | > info. So de

Re: [OMPI users] Openmpi 1.3 problems with libtool-ltdl on CentOS 4 and 5

2009-01-30 Thread Roy Dragseth
On Friday 23 January 2009 15:31:59 Jeff Squyres wrote: > Ew. Yes, I can see this being a problem. > > I'm guessing that the real issue is that OMPI embeds the libltdl from > LT 2.2.6a inside libopen_pal (one of the internal OMPI libraries). > Waving my hands a bit, but it's not hard to imagine som

Re: [OMPI users] Open MPI 1.3 segfault on amd64 with Rmpi

2009-01-30 Thread Jeff Squyres
On Jan 26, 2009, at 3:33 PM, Dirk Eddelbuettel wrote: Gdb doesn't want to step into the Open MPI code; I used debugging symbols for both R and Open MPI that are available via -dbg packages with the debugging info. So descending one function at a time, I see the following calling sequence

Re: [OMPI users] Pinned memory

2009-01-30 Thread Brian W. Barrett
On Thu, 29 Jan 2009, Gabriele Fatigati wrote: Dear OpenMPI Developer, i have a doubt regards mpi_leave_pinned parameter. Suppose i have a simple for: for( int i=0; i< 100; i++) MPI_Reduce(a, b, ...) My question is: if i set mpi_leave_pinned= 1, buffer memories are pinned in the entire pro

Re: [OMPI users] Rmpi and LAM

2009-01-30 Thread Brian W. Barrett
On Thu, 29 Jan 2009, Paul Wardman wrote: I'm using R on a Ubuntu 8.10 machine, and, in particular, quite a lot of papply calls to analyse data. I'm currently using the LAM implementation, as it's the only one I've got to work properly. However, while it works fine on one PC, it fails with the er

Re: [OMPI users] Using compiler_args in wrappers with Portland Group Compilers

2009-01-30 Thread Brian W. Barrett
On Thu, 29 Jan 2009, Wayne Gilmore wrote: I'm trying to use the compiler_args field in the wrappers script to deal with 32 bit compiles on our cluster. I'm using portland group compilers and use the following for 32 bit builds: -tp p7 (I actually tried to use -tp x32 but it does not compile co

Re: [OMPI users] Fwd: [GE users] Open MPI job fails when run thru SGE

2009-01-30 Thread Reuti
Am 30.01.2009 um 15:02 schrieb Sangamesh B: Dear Open MPI, Do you have a solution for the following problem of Open MPI (1.3) when run through Grid Engine. I changed global execd params with H_MEMORYLOCKED=infinity and restarted the sgeexecd in all nodes. But still the problem persists: $ca

Re: [OMPI users] open-mpi.org website down?

2009-01-30 Thread Jeff Squyres
Ok, it appears to be back now. Sorry for the interruption... On Jan 30, 2009, at 11:19 AM, Sean Davis wrote: On Fri, Jan 30, 2009 at 11:13 AM, Jeff Squyres wrote: FWIW, I usually announce short outages like that on the devel list; this one was supposed to only be 30 minutes this morning

Re: [OMPI users] open-mpi.org website down?

2009-01-30 Thread Sean Davis
On Fri, Jan 30, 2009 at 11:13 AM, Jeff Squyres wrote: > FWIW, I usually announce short outages like that on the devel list; this > one was supposed to only be 30 minutes this morning but they apparently ran > into some problems when trying to bring the machine back. > > There still appears to be

[OMPI users] Fwd: [GE users] Open MPI job fails when run thru SGE

2009-01-30 Thread Sangamesh B
Dear Open MPI, Do you have a solution for the following problem of Open MPI (1.3) when run through Grid Engine. I changed global execd params with H_MEMORYLOCKED=infinity and restarted the sgeexecd in all nodes. But still the problem persists: $cat err.77.CPMD-OMPI ssh_exchange_identification:

Re: [OMPI users] open-mpi.org website down?

2009-01-30 Thread Jeff Squyres
FWIW, I usually announce short outages like that on the devel list; this one was supposed to only be 30 minutes this morning but they apparently ran into some problems when trying to bring the machine back. There still appears to be a residual problem that the server is up (e.g., mail is fl

Re: [OMPI users] open-mpi.org website down?

2009-01-30 Thread Ralph Castain
It is briefly down for some maintenance this morning On Jan 30, 2009, at 7:14 AM, Sean Davis wrote: Is the open-mpi.org site down, or do I have a local problem with access? Thanks, Sean ___ users mailing list us...@open-mpi.org http://www.open-mp

[OMPI users] open-mpi.org website down?

2009-01-30 Thread Sean Davis
Is the open-mpi.org site down, or do I have a local problem with access? Thanks, Sean

Re: [OMPI users] openmpi over tcp

2009-01-30 Thread Peter Kjellstrom
On Thursday 29 January 2009, Ralph Castain wrote: > It is quite likely that you have IPoIB on your system. In that case, > the TCP BTL will pickup that interface and use it. ... Sub 3us latency rules out IPoIB for sure. The test below ran on native IB or some other very low latency path. > > # O

Re: [OMPI users] Issue with PBS Pro

2009-01-30 Thread Kiril Dichev
Hi, I did a few things wrong before: 1. The new name of the component "pls" is "plm". 2. It seems for the components, now a ":" separation is used instead of a "-" separation. Anyway, for me specifying "--enable-mca-static=plm:tm" seems to fix the problem - I still have shared libraries for Open