Re: [OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-11-19 Thread Shiqing Fan
Hi Martin, Thanks for the information. So it will be changed also for memchecker. Regards, Shiqing The (non modifying) access to a send buffer was agreed for MPI Standard 2.2 not version 2.1 see the MPI 2.2 Wiki: https://svn.mpi-forum.org/trac/mpi-forum-web/wiki/MpiTwoTwoWikiPage htt

Re: [OMPI users] /dev/shm

2008-11-19 Thread Ray Muno
Ralph Castain wrote: Hi Ray Are the jobs that leave files behind terminating normally or aborting? Are there any warnings/error messages out of mpirun? Just trying to determine if this is an abnormal termination issue or a bug in OMPI itself. Ralph As far as I know, they are from jobs t

Re: [OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-11-19 Thread Audet, Martin
4) Well, this sounds reasonable, but according to the MPI-1 standard (see page 40 for non-blocking send/recv, a more detailed explanation in page 30): "A nonblocking send call indicates that the system may start copying data out of the send buffer. The sender shoul

Re: [OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-11-19 Thread Shiqing Fan
Hi George, 4) Well, this sounds reasonable, but according to the MPI-1 standard (see page 40 for non-blocking send/recv, a more detailed explanation in page 30): "A nonblocking send call indicates that the system may start copying data out of the send buffer. The sender should */not access*/ a

Re: [OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-11-19 Thread George Bosilca
On Nov 19, 2008, at 10:18 , François PELLEGRINI wrote: 4) Well, this sounds reasonable, but according to the MPI-1 standard (see page 40 for non-blocking send/recv, a more detailed explanation in page 30): "A nonblocking send call indicates that the system may start copying data out of the

Re: [OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-11-19 Thread François PELLEGRINI
Bonjour Shiqing, Shiqing Fan wrote: > Dear François, > > Thanks a lot for your report, it's really a great help for us. :-) No problem. Your software helps me too, so as soon as you have fixes and new builds please tell me, so that I can try again. > For the issues: > 1) When you got "Condit

Re: [OMPI users] /dev/shm

2008-11-19 Thread Ralph Castain
Hi Ray Are the jobs that leave files behind terminating normally or aborting? Are there any warnings/error messages out of mpirun? Just trying to determine if this is an abnormal termination issue or a bug in OMPI itself. Ralph On Nov 19, 2008, at 8:05 AM, Ray Muno wrote: Thought I wo

Re: [OMPI users] /dev/shm

2008-11-19 Thread John Hearns
2008/11/19 Ray Muno > Thought I would revisit this one. > > We are still having issues with this. It is not clear to me what is leaving > the user files behind in /dev/shm. > > This is not something users are doing directly, they are just compiling > their code directly with mpif90 (from OpenMPI)

Re: [OMPI users] /dev/shm

2008-11-19 Thread Ray Muno
Thought I would revisit this one. We are still having issues with this. It is not clear to me what is leaving the user files behind in /dev/shm. This is not something users are doing directly, they are just compiling their code directly with mpif90 (from OpenMPI), using various compilers. Co

Re: [OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-11-19 Thread Shiqing Fan
Dear François, Thanks a lot for your report, it's really a great help for us. :-) For the issues: 1) When you got "Conditional jump" errors, normally that means some uninitialized(or undefined) values were used. The parameters that passed into PMPI_Init_thread might contain uninitialized va

Re: [OMPI users] Hybrid program

2008-11-19 Thread Stephen Wornom
Gabriele Fatigati wrote: Ok, but in Ompi 1.3 how can i enable it? This may not be relevant, but I could not get a hybrid mpi+OpenMP code to work correctly. Would my problem be related to Gabriele's and perhaps fixed in openmpi 1.3? Stephen 2008/11/18 Ralph Castain : I am afraid it is on

[OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-11-19 Thread François PELLEGRINI
Hello all, I am the main developer of the Scotch parallel graph partitioning package, which uses both MPI and Posix Pthreads. I have been doing a great deal of testing of my program on various platforms and libraries, searching for potential bugs (there may still be some ;-) ). The new memchec