[OMPI users] Bus Error in ompi_free_list_grow

2008-10-17 Thread Allen Barnett
Hi: A customer is running our parallel application on an SGI Altix machine. They compiled OMPI 1.2.8 themselves. The Altix uses IB interfaces and they recently upgraded to OFED 1.3 (in SGI Propack 6). They are receiving a bus error in ompi_free_list_grow: [r1i0n0:01321] *** Process received signal

Re: [OMPI users] Debian MPI -- mpirun missing

2008-10-17 Thread Raymond Wan
Hi all, Dirk Eddelbuettel wrote: On 18 October 2008 at 03:30, Terry Frankcombe wrote: | | But again, this is a discussion for the Debian list. In particularly for the 'package Open MPI maintainers' list at http://lists.alioth.debian.org/mailman/listinfo/pkg-openmpi-maintainers so

[OMPI users] MPI_ERR_TRUNCATE

2008-10-17 Thread Nick Collier
Hi, I'm getting an error I don't quite understand. The code: MPI_Irecv(recv->data, recv->count, recv->datatype, recv->sender_id, recv->agent_type, MPI_COMM_WORLD, &recv->request); ... recv = (AgentRequestRecv*) item->data; MPI_Wait(&recv->requ

Re: [OMPI users] OpenMPI 1.2.8 on Solaris: configure problems

2008-10-17 Thread George Bosilca
On Oct 17, 2008, at 12:59 PM, Ethan Mallove wrote: * --enable-ltdl-convenience * --no-create * --no-recursion * GCC on Solaris A user is not usually supposed to add these options. They are added by default when the build system detect that one of the configure files (configure.ac or one o

Re: [OMPI users] Debian MPI -- mpirun missing

2008-10-17 Thread Dirk Eddelbuettel
On 18 October 2008 at 03:30, Terry Frankcombe wrote: | | > Well when I use Open MPI I go with the new convention and call orterun | > instead of mpirun. I think you should have. Maybe a local alias in your | > ~/.bashrc can do the trick. | > | > Current packages do have mpirun.openmpi but we we

Re: [OMPI users] OpenMPI 1.2.8 on Solaris: configure problems

2008-10-17 Thread Ethan Mallove
On Fri, Oct/17/2008 05:53:07PM, Paul Kapinos wrote: > Hi guys, > > did you test OpenMPI 1.2.8 on Solaris at all?! We built 1.2.8 on Solaris successfully a few days ago: http://www.open-mpi.org/mtt/index.php?do_redir=869 But due to hardware/software/man-hour resource limitations, there are ofte

Re: [OMPI users] Debian MPI -- mpirun missing

2008-10-17 Thread Terry Frankcombe
> Well when I use Open MPI I go with the new convention and call orterun > instead of mpirun. I think you should have. Maybe a local alias in your > ~/.bashrc can do the trick. > > Current packages do have mpirun.openmpi but we were unable to devise a > bullet-proof scheme between lam, mpich and

Re: [OMPI users] Debian MPI -- mpirun missing

2008-10-17 Thread Dirk Eddelbuettel
On 18 October 2008 at 00:16, Raymond Wan wrote: | | Hi all, | | I'm very new to MPI and am trying to install it on to a Debian Etch | system. I did have mpich installed and I believe that is causing me Etch is getting old, and its Open MPI 1.1 package were in suboptimal shape. A few of us ge

Re: [OMPI users] Debian MPI -- mpirun missing

2008-10-17 Thread Ashley Pittman
On Sat, 2008-10-18 at 00:16 +0900, Raymond Wan wrote: > > Is there a package that I neglected to install? I did an "aptitude > search openmpi" and installed everything listed... :-) Or perhaps I > haven't removed all trace of mpich? According to packages.debian.org there isn't a openmpi paca

Re: [OMPI users] Problems with OpenMPI running with Rmpi

2008-10-17 Thread Dirk Eddelbuettel
On 17 October 2008 at 12:42, Simone Giannerini wrote: | Dear all, | | I managed to install successfully Rmpi 0.5-5 on a quad opteron machine (8 | cores overall) running on OpenSUSE 11.0 and Open MPI 1.5.2. | | this is what I get | | > library(Rmpi) | [gauss:24207] mca: base: component_find: una

Re: [OMPI users] Problem launching onto Bourne shell

2008-10-17 Thread Jeff Squyres
Doh; yes we did. This was a minor glitch in porting the 1.2 series fix to the trunk/v1.3 (i.e., the fix in v1.2.8 is ok -- whew!). Fixed on the trunk in r19758; thanks for noticing. I'll file a CMR for v1.3. On Oct 16, 2008, at 7:05 PM, Mostyn Lewis wrote: Jeff, You broke my ksh (and

[OMPI users] OpenMPI 1.2.8 on Solaris: configure problems

2008-10-17 Thread Paul Kapinos
Hi guys, did you test OpenMPI 1.2.8 on Solaris at all?! We tried to compile OpenMPI 1.2.8 on Solaris on Sparc and on Opteron for both GCC and SUN Studio compiler, in 32bit and 64bit versions, at all 2*2*2=8 versions, in the very same maneer we have installed 1.2.5 and 1.2.6 versions. The c

Re: [OMPI users] The --with-sge option

2008-10-17 Thread Jeff Squyres
On Oct 16, 2008, at 12:06 PM, Mike Hanby wrote: I’m compiling 1.2.8 on a system with SGE 6.1u4 and came across the “--with-sge” option on a Grid Engine posting. A couple questions: 1. I don’t see --with-sge mentioned in the “./configure --help" output, nor can I find much reference to it o

Re: [OMPI users] Debian MPI -- mpirun missing

2008-10-17 Thread Terry Frankcombe
Er, shouldn't this be in the Debian support list? A correctly installed OpenMPI will give you mpirun. If their openmpi-bin package doesn't, then surely it's broken? (Or is there a straight openmpi package?) On Sat, 2008-10-18 at 00:16 +0900, Raymond Wan wrote: > Hi all, > > I'm very new to M

[OMPI users] Debian MPI -- mpirun missing

2008-10-17 Thread Raymond Wan
Hi all, I'm very new to MPI and am trying to install it on to a Debian Etch system. I did have mpich installed and I believe that is causing me problems. I completely uninstalled it and then ran: update-alternatives --remove-all mpicc Then, I installed the following packages: libibverbs1

Re: [OMPI users] OpenMPI portability problems: debug info isn'thelpful

2008-10-17 Thread Mike Hanby
Some further clarification, I read a post over on the SGE mailing list that said the --with-sge is part of ompi 1.3, not 1.2.x. -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Aleksej Saushev Sent: Thursday, October 16, 2008 12:39 PM To:

[OMPI users] Problems with OpenMPI running with Rmpi

2008-10-17 Thread Simone Giannerini
Dear all, I managed to install successfully Rmpi 0.5-5 on a quad opteron machine (8 cores overall) running on OpenSUSE 11.0 and Open MPI 1.5.2. this is what I get > library(Rmpi) [gauss:24207] mca: base: component_find: unable to open osc pt2pt: file not found (ignored) libibverbs: Fatal: couldn

[OMPI users] OPAL_PREFIX is not passed to remote node in pls_rsh_module.c

2008-10-17 Thread Teng Lin
Hi All, We have bundled Open MPI with our product and shipped it to the customer. According to http://www.open-mpi.org/faq/?category=building#installdirs , Below is the command we used to launch MPI program: env OPAL_PREFIX=/path/to/openmpi \ /path/to/openmpi/bin//orterun --prefix /path/to/o

Re: [OMPI users] OPENMPI 1.2.7 & PGI compilers: configure option --disable-ptmalloc2-opt-sbrk

2008-10-17 Thread Francesco Iannone
Hi Jeff Sorry to disturb you I send you the Stack Frame captured with Totalview. The example program "callocrash" goes in Segmentation Violation on sYMALLOc function: set_head(remainder, remainder_size | PREV_INUSE); The Stack frame is Function "sYSMALLOc": nb:0x000