Re: [OMPI users] OPENMPI 1.2.7 & PGI compilers: configure option --disable-ptmalloc2-opt-sbrk

2008-10-15 Thread Jeff Squyres
On Oct 15, 2008, at 9:35 AM, Francesco Iannone wrote: I have a cluster of 16 nodes DualCPU DualCore AMD RAM 16 GB with InfiniBand CISCO HCA and switch InfiniBand. It uses Linux RH Enterprise 4 64 bit , OpenMPI 1.2.7, PGI 7.1-4 and openib-1.2-7. Hence it means that the option —disable-ptmall

Re: [OMPI users] Performance: MPICH2 vs OpenMPI

2008-10-15 Thread Rajeev Thakur
For MPICH2 1.0.7, configure with --with-device=ch3:nemesis. That will use shared memory within a node unlike ch3:sock which uses TCP. Nemesis is the default in 1.1a1. Rajeev > Date: Wed, 15 Oct 2008 18:21:17 +0530 > From: "Sangamesh B" > Subject: Re: [OMPI users] Performance: MPICH2 vs OpenMPI

Re: [OMPI users] OPENMPI 1.2.7 & PGI compilers: configure option --disable-ptmalloc2-opt-sbrk

2008-10-15 Thread Francesco Iannone
Hello Jeff First of all About your replay: ³ I'm surprised that we have not yet put this info in our FAQ -- I'll make a note to do so... ³ I sent support at Mailing list on date: 2008-08-21 12:43:40 Subject: [OMPI users] Memory allocation with PGI compiler About ptmalloc: I have a cluster of 1

Re: [OMPI users] Performance: MPICH2 vs OpenMPI

2008-10-15 Thread Sangamesh B
On Fri, Oct 10, 2008 at 10:40 PM, Brian Dobbins wrote: > > Hi guys, > > On Fri, Oct 10, 2008 at 12:57 PM, Brock Palen wrote: > >> Actually I had a much differnt results, >> >> gromacs-3.3.1 one node dual core dual socket opt2218 openmpi-1.2.7 >> pgi/7.2 >> mpich2 gcc >> > >For some reason