[OMPI users] CPU burning in Wait state

2008-09-02 Thread Vincent Rotival
Dear all I think I already read some comments on this issue, but I'd like to know of latest versions of OpenMPI have managed to solve it. I am now running 1.2.5 If I run a MPI program with synchronization routines (e.g. MPI_barrier, MPI_bcast...), all threads waiting for data are still burni

Re: [OMPI users] Problems with compilig of OpenMPI 1.2.7

2008-09-02 Thread Rolf Vandevaart
On 08/29/08 19:27, Jeff Squyres wrote: On Aug 29, 2008, at 10:48 AM, Rolf Vandevaart wrote: In the file mpicxx.cc there is a declaration near the bottom that looks like this. const int LOCK_SHARED = MPI_LOCK_SHARED; The preprocessor is going through that file and replacing LOCK_SHARED with

Re: [OMPI users] Help: MPIBLAST Crash

2008-09-02 Thread Brock Palen
Check out the first error: ADIOI_GEN_DELETE (line 22): **io No such file or directoryFatal Error: mpiblast.cppError reading database mbf file Check to make sure all your files are in place. Also many times you need to set you .ncbirc Brock Palen www.umich.edu/~brockp Center for Advanced Compu