Re: [OMPI users] How to get started?

2008-08-30 Thread Jeff Squyres
Adam -- Sorry for the delay; I've been on travels for what seems like forever and have fallen behind on updating the FAQ. I will definitely take your text and post it soon. Many thanks! (and keep it coming!) On Aug 28, 2008, at 8:10 AM, Adam C Powell IV wrote: With no comments in a we

Re: [OMPI users] Help: MPIBLAST Crash

2008-08-30 Thread Jeff Squyres
I'm afraid I don't know much/anything about mpiblast -- it looks like it could be a file system issue. For example, do you have permissions to read/write /usr/local/aaa.fa, and/or does it already exist on all the nodes where you're running? (I'm *guessing* that "-i foo" is the input file)

[OMPI users] Help: MPIBLAST Crash

2008-08-30 Thread Lee Amy
Hello, I use Open MPI 1.2.5 to compile MPIBLAST 1.5, it runs well. When I run job by this following command: mpirun -np 21 -mca pls_rsh_agent rsh mpiblast -p blastn -d test.fa -i /usr/local/aaa.fa -o output It shows these error messages: ADIOI_GEN_DELETE (line 22): **io No such file or director