Re: [OMPI users] Two different compilation of openmpi

2007-09-13 Thread Andrew J Caird
Francesco, We use modules (http://modules.sourceforge.net/) to manage 14 different OpenMPI versions on the same cluster, along with their associated applications. This is a nice way to establish dependancies between apps and libs and keep things organized. Good luck. --andy $ module avail

[OMPI users] Two different compilation of openmpi

2007-09-13 Thread Francesco Pietra
Is it possible to have two different compilations of openmpi on the same machine (dual-opterons, Debian Linux etch)? On that parallel computer sander.MPI (Amber9) and openmpi 1.2.3 have both been compiled with Intel Fortran 9.1.036. Now, I wish to install DOCK6 on this machine and I am advised th

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread richard.fried...@sun.com
Jeff Squyres wrote: What name/address do we want? d...@open-mpi.org? (or suggest an alternative) Sounds right to me. Only alternative might be docs_t...@open-mpi.org <>

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread Jeff Squyres
On Sep 13, 2007, at 4:17 PM, richard.fried...@sun.com wrote: As more people start chiming in wanting to help with OpenMPI documentation (a good thing!), maybe we should think about starting forum or separate email list just for this discussion. At least, initially to get the ball rolling. D

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread richard.fried...@sun.com
As more people start chiming in wanting to help with OpenMPI documentation (a good thing!), maybe we should think about starting forum or separate email list just for this discussion. At least, initially to get the ball rolling. Do we have the capability of creating a new mail list at open-mpi.

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread Jeff Pummill
Jeff, Count us in at the UofA. My initial impressions of Open MPI are very good and I would be open to contributing to this effort as time allows. Thanks! Jeff F. Pummill Senior Linux Cluster Administrator University of Arkansas Fayetteville, Arkansas 72701 (479) 575 - 4590 http://hpc.uark.ed

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread Jeff Squyres
So there are at least a few people who are interested in this effort (keep chiming in if you are interested so that we can get a tally of who would like to be involved). What kind of resources / organization would be useful for this group? Indiana University graciously hosts all of Open MP

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread pat . o'bryant
Jeff, I would also be interested. I am getting questions from my customers about the location of documentation. Thanks, Pat Jeff Squyres

Re: [OMPI users] connect failed with errno=111

2007-09-13 Thread Adrian Knoth
On Thu, Sep 13, 2007 at 11:15:47AM -0500, Tim Campbell wrote: > workstations. When mpirun tries to start the processes on certain > nodes I get the following error output. > > [sr70][0,1,2][btl_tcp_endpoint.c: > 572:mca_btl_tcp_endpoint_complete_connect] connect() failed with > errno=111 >

Re: [OMPI users] connect failed with errno=111

2007-09-13 Thread Tim Campbell
Thanks. I think I figured out the problem. I found that in my .ssh/ known_hosts there were several "bad" keys associated with some of the machines in the gridengine pool. My hypothesis is that when mpirun was establishing the connection topology of the processes there was some process pa

Re: [OMPI users] connect failed with errno=111

2007-09-13 Thread Pak Lui
Hi Tim, You could try setting -mca pls_gridengine_verbose 1 to show whether SGE is able to start the ORTE daemons on the remote nodes successfully. It seems you are having the problem previously asked by another user, Perhaps you may want to follow this thread and check your ifconfig setting

[OMPI users] connect failed with errno=111

2007-09-13 Thread Tim Campbell
Greetings, I am using OpenMPI v1.2.3 via SGE on a network of amd64 workstations. When mpirun tries to start the processes on certain nodes I get the following error output. [sr70][0,1,2][btl_tcp_endpoint.c: 572:mca_btl_tcp_endpoint_complete_connect] connect() failed with errno=111 [sr71

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread jody
Hi I would like to contribute something as well. I have about half a year of experience with OpenMPI, and i used LAM MPI for some more than half a year before. Jody

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread Jeff Squyres
I would be very happy to help setup a documentation community -- goodness knows we need more/better documentation for Open MPI! Who else would be interested? On Sep 13, 2007, at 5:13 AM, Amit Kumar Saha wrote: Hi Richard, On 9/12/07, Richard Friedman wrote: Amit: Well, as far as I kno

Re: [OMPI users] OpenMPI Documentation?

2007-09-13 Thread Amit Kumar Saha
Hi Richard, On 9/12/07, Richard Friedman wrote: > > Amit: > Well, as far as I know a documentation community within OpenMPI has not yet > been formed, but maybe it is time to send out a general call to the OpenMPI > members to see about creating one. > I'm new to the OpenMPI community myself,