Re: [OMPI users] MVAPI Options on Job Submission

2007-08-23 Thread Jeff Pummill
Hey Brock, Nope, no error messages during the execution. Plus, there were no errors when I built Open MPI, so I guess I am good. Thanks for the info. I appreciate it. Jeff F. Pummill University of Arkansas Fayetteville, Arkansas 72701 (479) 575 - 4590 http://hpc.uark.edu Brock Palen wro

Re: [OMPI users] MVAPI Options on Job Submission

2007-08-23 Thread Brock Palen
You will know if it doesn't, You will have a bunch of messages about not finding a ib card and that openMPI is falling back to another transport. Do all your nodes have infiniband? Brock Palen Center for Advanced Computing bro...@umich.edu (734)936-1985 On Aug 23, 2007, at 9:27 PM, Jeff P

[OMPI users] MVAPI Options on Job Submission

2007-08-23 Thread Jeff Pummill
I have successfully compiled Open MPI 1.2.3 against Intel 8.1 compiler suite and old (3 years) mvapi stack using the following configure: configure --prefix=/nfsutil/openmpi-1.2.3 --with-mvapi=/usr/local/topspin/ CC=icc CXX=icpc F77=ifort FC=ifort Do I need to assign any particular flags to t

Re: [OMPI users] openmpi realloc() holding onto memory when glibc doesn't

2007-08-23 Thread Tim Prins
Hi Josh, I am not an expert in this area of the code, but I'll give it a shot. (I assume you are using linux due to your email address) When using the memory manager (which is the default on linux), we wrap malloc/realloc/etc with ptmalloc2 (which is the same allocator used in glibc 2.3.x). W

Re: [OMPI users] MPI_FILE_NULL

2007-08-23 Thread Bernd Schubert
Brian Barrett wrote: > On Aug 23, 2007, at 4:33 AM, Bernd Schubert wrote: > >> I need to compile a benchmarking program and absolutely so far do >> not have >> any experience with any MPI. >> However, this looks like a general open-mpi problem, doesn't it? >> >> bschubert@lanczos MPI_IO> make >>

Re: [OMPI users] MPI_FILE_NULL

2007-08-23 Thread Brian Barrett
On Aug 23, 2007, at 4:33 AM, Bernd Schubert wrote: I need to compile a benchmarking program and absolutely so far do not have any experience with any MPI. However, this looks like a general open-mpi problem, doesn't it? bschubert@lanczos MPI_IO> make cp ../globals.f90 ./; mpif90 -O2 -c ../glo

Re: [OMPI users] openmpi realloc() holding onto memory when glibc doesn't

2007-08-23 Thread Josh Aune
I have found that the infiniserv MPI that comes with our IB software distribution tracks the same behaviour as gcc (releaseing memory on realloc). I have also found that building openmpi with --without-memory-manager makes openmpi track the same behaviour as glibc. I'm guessing that there is a b

[OMPI users] MPI_FILE_NULL

2007-08-23 Thread Bernd Schubert
Hi, I need to compile a benchmarking program and absolutely so far do not have any experience with any MPI. However, this looks like a general open-mpi problem, doesn't it? bschubert@lanczos MPI_IO> make cp ../globals.f90 ./; mpif90 -O2 -c ../globals.f90 mpif90 -O2 -c main.f90 mpif90 -O2 -c reade