Re: [OMPI users] Error: error in configure (maybe libtool)

2007-08-22 Thread Brian Barrett
On Aug 22, 2007, at 2:35 PM, Higor de Padua Vieira Neto wrote: At the end of the output file, just show this: " (...lot of output ...) config.status: creating opal/include/opal_config.h config.status: creating orte/include/orte_config.h config.status: orte/include/orte_config.h is unchanged conf

[OMPI users] Error: error in configure (maybe libtool)

2007-08-22 Thread Higor de Padua Vieira Neto
Hi, I had a problem while I was executing the configure script as user. I tried configure in a kernel linux 2.4.x, Red Hat using this option: '--prefix=$HOME/bin/openmpi' At the end of the output file, just show this: " (...lot of output ...) config.status: creating opal/include/opal_config.h co

Re: [OMPI users] building static and shared OpenMPI libraries on MacOSX

2007-08-22 Thread Lev Givon
Received from Brian Barrett on Wed, Aug 22, 2007 at 10:50:09AM EDT: > On Aug 21, 2007, at 10:52 PM, Lev Givon wrote: > > > (Running ompi_info after installing the build confirms the absence of > > said components). My concern, unsurprisingly, is motivated by a desire > > to use OpenMPI on an xgrid

Re: [OMPI users] building static and shared OpenMPI libraries on MacOSX

2007-08-22 Thread Brian Barrett
On Aug 21, 2007, at 10:52 PM, Lev Givon wrote: (Running ompi_info after installing the build confirms the absence of said components). My concern, unsurprisingly, is motivated by a desire to use OpenMPI on an xgrid cluster (i.e., not with rsh/ssh); unless I am misconstruing the above observation

Re: [OMPI users] OpenMPI fails to initalize the openib btl when run from SGE

2007-08-22 Thread Noam Meltzer
Hi, Thanks all who answered. The problem was indeed in the max. locked memory limitation. Though, changing it in /default/common/settings.sh was not enough. I also had to add ". /default/common/settings.sh" to /default/common/sgeexecd (and to /etc/init.d/sgeexecd on the compute nodes) as when

Re: [OMPI users] OpenMPI fails to initalize the openib btl when run from SGE

2007-08-22 Thread Jeff Squyres
I suspect that your SGE daemons are not starting with the proper locked memory limits (and therefore jobs started under SGE get severely limited locked memory limits). See these FAQ entries -- the issues described for SLURM are applicable to all resource managers (to include SGE): http://

Re: [OMPI users] OpenMPI fails to initalize the openib btl when run from SGE

2007-08-22 Thread Gleb Natapov
On Wed, Aug 22, 2007 at 03:31:20PM +0300, Noam Meltzer wrote: > Hi, > > I am running openmpi-1.2.3 compiled for 64bit on RHEL4u4. > I also have a Voltaire InfiniBand interconnect. > When I manually run jobs using the following command: > > /opt/local/openmpi-1.2.3-gcc4/bin/orterun -np 8 -hostfile

[OMPI users] OpenMPI fails to initalize the openib btl when run from SGE

2007-08-22 Thread Noam Meltzer
Hi, I am running openmpi-1.2.3 compiled for 64bit on RHEL4u4. I also have a Voltaire InfiniBand interconnect. When I manually run jobs using the following command: /opt/local/openmpi-1.2.3-gcc4/bin/orterun -np 8 -hostfile ~/myHostList -mca btl self,openib /tcc/eandm/performance/igor/main.exe.op

Re: [OMPI users] How to build and use checkpoint/restart fault tolerance in Open MPI.

2007-08-22 Thread Josh Hursey
The problem is not with your setup, but with a limitation of the current checkpoint/restart implementation in Open MPI. Currently, Open MPI requires that the MPI process be inside the MPI library in order to make progress on a checkpoint request. This is because all checkpoint coordinatio

Re: [OMPI users] How to build and use checkpoint/restart fault tolerance in Open MPI.

2007-08-22 Thread Hiep Bui Hoang
Hi, I had compiled and installed Open MPI with C/R support in the way Josh said. When finished, Open MPI had support and tools for C/R: ompi-checkpoint, ompi-restart. And I try an example ( hello_c.c in examples folder, but I edit it with a for loop to print out "Hello..." 1,000,000 times) But I ge

Re: [OMPI users] building static and shared OpenMPI libraries on MacOSX

2007-08-22 Thread Lev Givon
Received from Brian Barrett on Wed, Aug 22, 2007 at 12:05:32AM EDT: > On Aug 21, 2007, at 3:32 PM, Lev Givon wrote: > > > configure: WARNING: *** Shared libraries have been disabled (-- > > disable-shared) > > configure: WARNING: *** Building MCA components as DSOs > > automatically disabled >

Re: [OMPI users] building static and shared OpenMPI libraries on MacOSX

2007-08-22 Thread Brian Barrett
On Aug 21, 2007, at 3:32 PM, Lev Givon wrote: configure: WARNING: *** Shared libraries have been disabled (-- disable-shared) configure: WARNING: *** Building MCA components as DSOs automatically disabled checking which components should be static... none checking for projects containing MCA