Just some additional info, confirm that TMPDIR exists in job environment
and the sge_execd does create the TMPDIR path on the designate file system.
Here is my test:
$ cat sge_dd_allq.sh
#!/bin/bash
#
# It prints the actual path of the job scratch directory.
#
#$ -j y
#$ -cwd
#$ -N dd_allq
#$ -l m
Hi all,
We are switching to a cluster of CentOS7 with SGE 8.1.9 installed.
We have a prolog script that does XFS disk space allocation according to
TMPDIR.
However, the prolog script does not receive TMPDIR which should be created
by the scheduler.
Other variables such as JOB_ID, PE_HOSTFILE ar
I found my entry about this:
https://arc.liv.ac.uk/trac/SGE/ticket/570
-- Reuti
> Am 06.12.2018 um 19:03 schrieb Reuti :
>
> Hi,
>
>> Am 06.12.2018 um 18:36 schrieb Dan Whitehouse :
>>
>> Hi,
>> I've been running some MPI jobs and I expected that when the job started
>> a $TMPDIR would be cr
Perhaps you can 'wrap' the 'work' in a small script (work.sh), like:
#!/bin/bash
## pre-work
echo TMP: $TMP
OUT=$TMP/env.$JOB_ID.$OMPI_COMM_WORLD_RANK.txt
## WORK
env > $OUT 2>&1
## report and clean up?
ls -la $TMP
rsync -av $OUT $SGE_CWD_PATH
Then use a wrapper.sh job script to 'mpiexec ./work.s
Hi,
> Am 06.12.2018 um 18:36 schrieb Dan Whitehouse :
>
> Hi,
> I've been running some MPI jobs and I expected that when the job started
> a $TMPDIR would be created on all of the nodes, however with our (UGE)
> configuration that does not appear to be the case.
>
> It appears that while on th
Hi,
I've been running some MPI jobs and I expected that when the job started
a $TMPDIR would be created on all of the nodes, however with our (UGE)
configuration that does not appear to be the case.
It appears that while on the "master" node a $TMPDIR is created and
persists for the duration of
Sweet! Glad to see you’re up and running.
-H
From: Dimar Jaime González Soto
Sent: Thursday, December 6, 2018 11:57 AM
To: MacMullan IV, Hugh
Subject: Re: [gridengine users] problem with concurrent jobs
I disabled that quota and no I can see 60 processes running. Thanks
El jue., 6 dic. 2018
Yes, as Ruti said:
What’s the output from ‘qconf -srqs’ (line 1 of the max_slots rule)? Looks like
you’re being blocked there (RQS).
-H
From: Dimar Jaime González Soto
Sent: Thursday, December 6, 2018 11:22 AM
To: MacMullan IV, Hugh
Subject: Re: [gridengine users] problem with concurrent jobs
Also: I'm surprised 'qalter -w p ' doesn't show any output. Did you
forget the JOBID?
-H
-Original Message-
From: users-boun...@gridengine.org On Behalf Of
Reuti
Sent: Thursday, December 6, 2018 11:04 AM
To: Dimar Jaime González Soto
Cc: users@gridengine.org
Subject: Re: [gridengine u
> Am 06.12.2018 um 16:59 schrieb Dimar Jaime González Soto
> :
>
> qconf -sconf shows:
>
> #global:
> execd_spool_dir /var/spool/gridengine/execd
> ...
> ax_aj_tasks 75000
So, this is fine too. Next place: is the amount of overall slots limited:
$ qconf -se global
qconf -sconf shows:
#global:
execd_spool_dir /var/spool/gridengine/execd
mailer /usr/bin/mail
xterm/usr/bin/xterm
load_sensor none
prolog none
epilog none
shell_start_mode
> Am 06.12.2018 um 15:19 schrieb Dimar Jaime González Soto
> :
>
> qconf -se ubuntu-node2 :
>
> hostname ubuntu-node2
> load_scaling NONE
> complex_valuesNONE
> load_values arch=lx26-amd64,num_proc=16,mem_total=48201.960938M, \
> sw
qconf -se ubuntu-node2 :
hostname ubuntu-node2
load_scaling NONE
complex_valuesNONE
load_values arch=lx26-amd64,num_proc=16,mem_total=48201.960938M, \
swap_total=95746.996094M,virtual_total=143948.957031M, \
load_avg=3.74,load_shor
qhost :
HOSTNAMEARCH NCPU LOAD MEMTOT MEMUSE SWAPTO
SWAPUS
---
global - - - - - -
-
ubuntu-frontend lx26-amd64 16 4.13 31.4
> Am 06.12.2018 um 15:07 schrieb Dimar Jaime González Soto
> :
>
> qalter -w p doesn't shows anything, qstat shows 16 processes and not 60:
>
> 250 0.5 OMAcbuach r 12/06/2018 11:04:15
> main.q@ubuntu-node21 1
> 250 0.5 OMAcbuach
qalter -w p doesn't shows anything, qstat shows 16 processes and not 60:
250 0.5 OMAcbuach r 12/06/2018 11:04:15
main.q@ubuntu-node21 1
250 0.5 OMAcbuach r 12/06/2018 11:04:15
main.q@ubuntu-node12 1 2
250 0.5000
> Am 06.12.2018 um 09:47 schrieb Hay, William :
>
> On Wed, Dec 05, 2018 at 03:29:23PM -0300, Dimar Jaime Gonz??lez Soto wrote:
>> the app site is https://omabrowser.org/standalone/ I tried to make a
>> parallel environment but it didn't work.
> The website indicates that an array job should
On Wed, Dec 05, 2018 at 03:29:23PM -0300, Dimar Jaime Gonz??lez Soto wrote:
>the app site is https://omabrowser.org/standalone/ I tried to make a
>parallel environment but it didn't work.
The website indicates that an array job should work for this.
Has the load average spiked to the point
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