[gridengine users] parallel job does not run on many cups

2016-06-10 Thread Ulrich Hiller
Hello, I have a problem submiiting parralel jobs, e.g.: qsub -pe orte 4 -cwd -V <<< "mpiexec -n 4 a.out" No files are opened by this program, only output to stdout. The master has 8 nodes, with 24 to 64 cpus each (see output of qhost in the attachment). My problem: When i send with qsub, i can

Re: [gridengine users] core binding stopped working

2016-06-10 Thread MacMullan IV, Hugh
Another angle to consider is from the MATLAB side: using the '-singleCompThread' option in your matlab and worker scripts ($MATLAB_ROOT/bin/(matlab|worker)): $ diff matlab.dist matlab 497c497 < arglist="" --- > arglist="-singleCompThread" $ diff worker.dist worker 19c19 < exec "${bindir

Re: [gridengine users] core binding stopped working

2016-06-10 Thread William Hay
On Tue, May 24, 2016 at 07:20:48PM -0400, berg...@merctech.com wrote: > We're running SoGE 8.1.6 under CentOS6 and had successfully been using > qstat -j 2005747 > == > job_number: 2005747 > exec_file: job_

Re: [gridengine users] Create high priority users on a specific queue

2016-06-10 Thread William Hay
On Thu, Jun 09, 2016 at 05:53:35PM +0200, R??my Dernat wrote: >Hi, >I am working on a way to prioritize jobs from some users on some specific >queues. I know it can be done, but I do not know exactly how. AIUI grid engine has a single notion of priority for the whole cluster and as far