Hello Everyone,
Till now I have been writing simple scripts to do my work. Now I want to
automate my task.
I have no idea about submitting array jobs
So here is the explanation of what I want to do and then you can help me
how to design the script.
In a directory I have these 4 fastq files
A-122
Am 08.04.2014 um 16:45 schrieb Fan Dong:
>
> On 04/08/2014 10:41 AM, Reuti wrote:
>> Am 08.04.2014 um 16:34 schrieb Fan Dong:
>>
>>> On 04/08/2014 10:17 AM, Reuti wrote:
Am 08.04.2014 um 16:02 schrieb Fan Dong:
> Thanks for the help. I guess part of my original question was 'will
On 04/08/2014 10:41 AM, Reuti wrote:
Am 08.04.2014 um 16:34 schrieb Fan Dong:
On 04/08/2014 10:17 AM, Reuti wrote:
Am 08.04.2014 um 16:02 schrieb Fan Dong:
Thanks for the help. I guess part of my original question was 'will h_vmem
help the scheduler to hold off the job if the node does no
Am 08.04.2014 um 16:34 schrieb Fan Dong:
>
> On 04/08/2014 10:17 AM, Reuti wrote:
>> Am 08.04.2014 um 16:02 schrieb Fan Dong:
>>
>>> Thanks for the help. I guess part of my original question was 'will h_vmem
>>> help the scheduler to hold off the job if the node does not have enough
>>> h_vme
On 04/08/2014 10:17 AM, Reuti wrote:
Am 08.04.2014 um 16:02 schrieb Fan Dong:
Thanks for the help. I guess part of my original question was 'will h_vmem
help the scheduler to hold off the job if the node does not have enough h_vmem
left?'
Say, we have
• a consumable h_vmem (qconf -
Am 08.04.2014 um 16:02 schrieb Fan Dong:
> Thanks for the help. I guess part of my original question was 'will h_vmem
> help the scheduler to hold off the job if the node does not have enough
> h_vmem left?'
>
> Say, we have
> • a consumable h_vmem (qconf -mc) with default value 4GB,
Thanks for the help. I guess part of my original question was 'will
h_vmem help the scheduler to hold off the job if the node does not have
enough h_vmem left?'
Say, we have
* a consumable h_vmem (qconf -mc) with default value 4GB,
* the exec host h1 and h2 both have h_vmem = 32GB (qconf -
Hi,
Am 08.04.2014 um 13:57 schrieb Edrisse Chermak:
> We have a set of machines with 4 sockets of 8 cores for each machine
> (so, 32 cores per machine).
> We usually ask 8 cores for most of our jobs.
> We would like to bind each job submitted to any free socket available.
What you can do in SGE
Dear Grid Engine developers and users,
We have a set of machines with 4 sockets of 8 cores for each machine
(so, 32 cores per machine).
We usually ask 8 cores for most of our jobs.
We would like to bind each job submitted to any free socket available.
So, my question is : Is there a way for Gri
Dear Grid Engine developers and users,
We have a set of machines with 4 sockets of 8 cores for each machine
(so, 32 cores per machine).
We usually ask 8 cores for most of our jobs.
We would like to bind each job submitted to any free socket available.
So, my question is : Is there a way for Grid
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