Re: Problems trying to create a snap package for bioinformatics tools

2016-11-30 Thread Leo Arias
Hello Gordon, On Fri, Oct 14, 2016 at 3:09 AM, Gordon Ball wrote: > > * Trying to run any of the binaries gives the error > > failed to create user data directory. errmsg: Permission denied > >This is presumably related to #1592696, but in this case $HOME is on > an NFS mount under /mnt.

Re: Problems trying to create a snap package for bioinformatics tools

2016-10-25 Thread Leo Arias
On Mon, Oct 24, 2016 at 8:54 AM, Didier Roche wrote: > > Also, I don't see any reason why we are preventing underscores in app > name (nothing in yaml prevents key to be underscores). I don't link such > command name in general, but I don't see any good reasons for this. > Gustavo, is that deliber

Re: Problems trying to create a snap package for bioinformatics tools

2016-10-25 Thread Gustavo Niemeyer
Hi Gordon, On Mon, Oct 24, 2016 at 12:13 PM, Gordon Ball wrote: > > * The package contains multiple binaries, and the links in /snap/bin > are named, eg `cufflinks.cuffdiff`, which makes them incompatible with > existing scripts. As you can imagine the problem here is namespacing. Unlike in tr

Re: Problems trying to create a snap package for bioinformatics tools

2016-10-25 Thread Jamie Strandboge
On Mon, 2016-10-24 at 16:54 +0200, Didier Roche wrote: > Le 24/10/2016 à 16:13, Gordon Ball a écrit : > > > > > Hello > Hey Gordon, > > > > > I have been trying to create a snap package for the `cufflinks` [1] > > biofinformatics tools. These are packaged for debian/ubuntu, but the > > package

Re: Problems trying to create a snap package for bioinformatics tools

2016-10-25 Thread Sergio Schvezov
El 24/10/16 a las 11:54, Didier Roche escribió: Also, I don't see any reason why we are preventing underscores in app name (nothing in yaml prevents key to be underscores). I don't link such command name in general, but I don't see any good reasons for this. Gustavo, is that deliberate? Jami

Re: Problems trying to create a snap package for bioinformatics tools

2016-10-24 Thread Didier Roche
Le 24/10/2016 à 16:13, Gordon Ball a écrit : > Hello Hey Gordon, > I have been trying to create a snap package for the `cufflinks` [1] > biofinformatics tools. These are packaged for debian/ubuntu, but the > package is not built for xenial due to issues with boost 1.56-1.59. [2] Nice way to shi