Re: [slurm-users] --uid , --gid option is root only now :'(

On 2018-05-10 21:48, Christopher Benjamin Coffey wrote: Hi, We noticed that recently --uid, and --gid functionality changed where previously a user in the slurm administrators group could launch jobs successfully with --uid, and --gid , allowing for them to submit jobs as another user. Now,

Re: [slurm-users] Python and R installation in a SLURM cluster

Just for completion. I can recommend using singularity /docker containers. You can copy them to the worker nodes during sbatch. In the long run it eases up a lot. Viele Grüße / kind regards Georg 2018-05-10 17:48 GMT+02:00 Simon Flood : > On 10/05/18 16:35, Eric F.

[slurm-users] Slurm source installation

Hi! The plugins that I was mencioned are: DMTCP,Padb,Hostlist,Interactive Script,mpich, openmpi, Node Health Check,PEStat,HDF5, PMIx and sqlog. I've got these from: https://slurm.schedmd.com/download.html I installed these plugins manually and after I installed slurm manually. Now, I'm going

Re: [slurm-users] Interactive job with srun

Seems to be odd. there is no active job, but the command is waiting for resources. Why? Regards, Mahmood On Sun, May 13, 2018 at 4:25 PM, Mahmood Naderan wrote: > Hi, > Although there is no active job in the queue, the srun doesn't grant a node. > > [mahmood@rocks7 ~]$ date > Sun May 13 16:20:

Re: [slurm-users] Splitting mpi rank output

Thanks Chris! :) — Christopher Coffey High-Performance Computing Northern Arizona University 928-523-1167 On 5/10/18, 12:42 AM, "slurm-users on behalf of Chris Samuel" wrote: On Thursday, 10 May 2018 2:25:49 AM AEST Christopher Benjamin Coffey wrote: > I have a user trying to u

Re: [slurm-users] Issue with salloc

Mahmood, You need to put all the options to srun before the executable that you want to run, which in this case is /bin/bash. So, it should look more like: srun -l -a em1 -p IACTIVE --mem=4GB --pty -u /bin/bash The way you have it most of your srun options are being interpreted as bash argum

Re: [slurm-users] Interactive job with srun

OK thanks to robert, the issue has been solved in another topic which is about salloc. Regards, Mahmood On Mon, May 14, 2018 at 7:08 PM, Mahmood Naderan wrote: > Seems to be odd. there is no active job, but the command is waiting > for resources. Why? > Regards, > Mahmood > > > > > On Sun, May

Re: [slurm-users] Issue with salloc

Yes you are right. I missed some options. About --mem, it seems that without specifying that option, the srun won't work and it says about QOS policy error. I have set an upper limit (8G) for the user in the account. So, I expect that when I don't specify --mem, slurm will handle that and will abor

[slurm-users] slurm: error: Security violation, ping RPC from uid 1000

Both my frontEnd and compute node has the same `UID` and `GID` but I am having same error on [slurm uid and gid must be consistent across the cluster ]. How can I fix this problem? **My frontEnd:** $id uid=1000(alper) gid=1003(alper)

[slurm-users] x11 for interactive jobs

Hi, I see --x11 option in [1], but there isn't any such option. Is that for old versions? Also, there is a wrapper [2] for srun.x11. Is there any builtin x11 support in slurm? [1] https://wikis.nyu.edu/display/NYUHPC/Running+interactive+jobs [2] https://github.com/jbornschein/srun.x11 Regards, Ma

Re: [slurm-users] x11 for interactive jobs

There is a spank x11 plugin that I think pretty much everyone used: https://github.com/hautreux/slurm-spank-x11 -Paul Edmon- On 05/14/2018 02:44 PM, Mahmood Naderan wrote: Hi, I see --x11 option in [1], but there isn't any such option. Is that for old versions? Also, there is a wrapper [2] fo

Re: [slurm-users] x11 for interactive jobs

On Mon, 2018-05-14 at 23:14 +0430, Mahmood Naderan wrote: > I see --x11 option in [1], but there isn't any such option. Is that > for old versions? Also, there is a wrapper [2] for srun.x11. Is there > any builtin x11 support in slurm? There is native X11 support in slurm but after testing it and