Dear Mike and Jan,
Thank you for your suggestions. Mike, your script was close to what I had
in mind, though way more elegant. So I appreciate it!
Also Jan, thank you for pointing out snakemake. Apparently people do use it
with Slurm, so I'm looking into it. Probably overkill at this point for
mo
Snakemake is a tool to manage job dependencies. I don't have experience
using this in a slurm context, but I have used Snakemake to manage
complex depencies in workflows in other contexts. Snakemake should
support slurm.
HTH,
Jan
On 02-03-2021 20:16, Jason Simms wrote:
Hello all,
I am r
B2N=$(echo ${JOB2N} | sed 's/:$//g')
echo "Submitting last job"
sbatch --dependency=afterok:$JOB2N joblast.sh
From: slurm-users on behalf of Jason
Simms
Date: Tuesday, March 2, 2021 at 1:18 PM
To: Slurm User Community List
Subject: [slurm-users] Managing Multiple Dependenc
Hello all,
I am relatively new to the nuances of handling complex dependencies in
Slurm, so I'm hoping the hive mind can help. I have a user wanting to
accomplish the following:
- submit one job
- submit multiple jobs that are dependent on the output from the first
job (so they just need
