On 11/01/2019 08.29, Sergey Koposov wrote:
> > Hi,
> >
> > I've recently migrated to slurm from pbs on our cluster. Because of that,
> > now the job memory limits are
> > strictly enforced and that causes my code to get killed.
> > The trick is that my c
Hi Janne,
On Fri, 2019-01-11 at 10:37 +0200, Janne Blomqvist wrote:
> On 11/01/2019 08.29, Sergey Koposov wrote:
> > What is your memory limit configuration in slurm? Anyway, a few things to
> > check:
I guess these are the most relevant (uncommented) params I could see in the
Hi,
I've recently migrated to slurm from pbs on our cluster. Because of that, now
the job memory limits are
strictly enforced and that causes my code to get killed.
The trick is that my code uses memory mapping (i.e. mmap) of one single large
file (~12 Gb) in each thread on each node.
With thi
