Re: [slurm-users] Reproducible irreproducible problem (timeout?)

2023-12-20 Thread Laurence Marks
] > https://services.northwestern.edu/TDClient/30/Portal/KB/ArticleDet?ID=1795 > > [2] > https://bioinformaticsworkbook.org/Appendix/HPC/SLURM/submitting-dependency-jobs-using-slurm.html#gsc.tab=0 > > [3] https://slurm.schedmd.com/sbatch.html#OPT_dependency > > >

Re: [slurm-users] Reproducible irreproducible problem (timeout?)

2023-12-20 Thread Laurence Marks
Dependencies is not an appropriate approach. --- Professor Laurence Marks (Laurie) www.numis.northwestern.edu "Research is to see what everybody else has seen, and to think what nobody else has thought" Albert Szent-Györgyi On Wed, Dec 20, 2023, 14:40 Renfro, Michael wrote:

Re: [slurm-users] Reproducible irreproducible problem (timeout?)

2023-12-20 Thread Laurence Marks
r ABC in XYZ" then I may persuade them to look at specifics. They will need the coaching, alas. On Wed, Dec 20, 2023 at 1:25 PM Gerhard Strangar wrote: > Laurence Marks wrote: > > > After some (irreproducible) time, often one of the three slow tasks > hangs. > > A symptom

[slurm-users] Reproducible irreproducible problem (timeout?)

2023-12-20 Thread Laurence Marks
years). I wonder if there are some timeouts or something similar which drop connectivity. I also wonder whether repeated launching of srun subtasks might be doing something beyond what is normally expected. -- Emeritus Professor Laurence Marks (Laurie) Northwestern University Web