Hi,
My cluster has 2 nodes, with the first having 2 gpus and the second 1 gpu.
The states of both nodes is "drained" because "gres/gpu count reported
lower than configured": any idea why this happens? Thanks.
My .conf files are:
slurm.conf
AccountingStorageTRES=gres/gpu
GresTypes=gpu
NodeName=t
Grazie Gennaro,
It's working!
On Mon, Dec 6, 2021 at 9:41 AM Gennaro Oliva wrote:
> Ciao Giuseppe,
>
> On Mon, Dec 06, 2021 at 03:46:02AM +0100, Giuseppe G. A. Celano wrote:
> > sinfo: symbol lookup error: sinfo: undefined symbol: slurm_conf
> > srun: symbol loo
xfree_ptr
sacct: symbol lookup error: sacct: undefined symbol:
slurm_destroy_selected_step
Does anyone know the reason for that? Thanks.
Best,
Giuseppe
On Sat, Dec 4, 2021 at 5:31 PM Giuseppe G. A. Celano <
giuseppegacel...@gmail.com> wrote:
> Hi Gennaro,
>
&
am not sure
whether I should try to uninstall my previous installation and reinstall
slurm-wlm...
On Sat, Dec 4, 2021 at 12:38 PM Gennaro Oliva
wrote:
> Ciao Giuseppe,
>
> On Sat, Dec 04, 2021 at 02:30:40AM +0100, Giuseppe G. A. Celano wrote:
> > I have installed almost all
ent.so", whereas
> libmariadb-dev provides "libmariadb.so"
> --
> *From:* slurm-users on behalf of
> Giuseppe G. A. Celano
> *Sent:* Saturday, 4 December 2021 11:40
> *To:* Slurm User Community List
> *Subject:* Re: [slurm-users] [
10.4.22
On Sat, Dec 4, 2021 at 1:35 AM Brian Andrus wrote:
> Which version of Mariadb are you using?
>
> Brian Andrus
> On 12/3/2021 4:20 PM, Giuseppe G. A. Celano wrote:
>
> After installation of libmariadb-dev, I have reinstalled the entire slurm
> with ./configure + op
normally use)
> make
> make install
>
> on your DBD server after you installed the mariadb-devel package?
>
> --
> *From:* slurm-users on behalf of
> Giuseppe G. A. Celano
> *Sent:* Saturday, 4 December 2021 10:07
> *To:* Slurm User Commun
The problem is the lack of /usr/lib/slurm/accounting_storage_mysql.so
I have installed many mariadb-related packages, but that file is not
created by slurm after installation: is there a point in the documentation
where the installation procedure for the database is made explicit?
On Fri, Dec
:36:41.022] error: _slurm_persist_recv_msg: only read 0 of
2613 bytes
[2021-12-03T15:36:41.022] error: Sending PersistInit msg: No error
[2021-12-03T15:36:41.022] error: DBD_GET_RES failure: No error
[2021-12-03T15:36:41.022] fatal: You are running with a database but for
some reason we have no TRES
OND failure:
Unspecified error*
Does anyone have a suggestion to solve this problem? Thank you very much.
Best,
Giuseppe
| Ryan Novosielski -
novos...@rutgers.edu<mailto:novos...@rutgers.edu>
|| \\ University | Sr. Technologist - 973/972.0922 (2x0922) ~*~ RBHS Campus
|| \\of NJ | Office of Advanced Research Computing - MSB C630, Newark
`'
On Sep 30, 2020, at 09:38, Luecht, Jeff A
mail
and used 'scontrol --defaults job '
command. The CPU allocation now works as expected.
I do have one question though - what is the benefit/recommendation of using
srun to execute a process within SBATCH. We are running primarily python jobs,
but need to also support R jobs.
---
HadoopTest
UserId=** GroupId=** MCS_label=N/A
Priority=4294901604 Nice=0 Account=(null) QOS=(null)
JobState=RUNNING Reason=None Dependency=(null)
Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
RunTime=00:00:06 TimeLimit=08:00:00 TimeMin=N/A
SubmitTime=2020-0
before
clicking on links, opening attachments, or responding. **
what leads you to believe that you're getting 2 CPU's instead of 1?
'scontrol show job ' would be a helpful first start.
On Tue, Sep 29, 2020 at 9:56 AM Luecht, Jeff A wrote:
>
> I am working on my first ev
** GroupId=** MCS_label=N/A
Priority=4294901604 Nice=0 Account=(null) QOS=(null)
JobState=RUNNING Reason=None Dependency=(null)
Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
RunTime=00:00:06 TimeLimit=08:00:00 TimeMin=N/A
SubmitTime=2020-09-29T10:40:09 EligibleTime=2020-09-2
I am working on my first ever SLURM cluster build for use as a resource manager
in a JupyterHub Development environment. I have configured the cluster for
SelectType of 'select/con_res' with DefMemPerCPU and MaxMemPerCPU of 16Gb. The
idea is to essentially provide for jobs that run
Is there any issue if I set/change the slurm account password?I'm running
19.05.x
Current state is locked but I have to reset it periodically:
# passwd --status slurm
slurm LK 2014-02-03 -1 -1 -1 -1 (Password locked.)
Best Regards,
RB
Hi!
I'm trying to install Slurm 20.02 on my cluster with the GPU features. However,
only my compute nodes have GPUs attached and so when I try to install the
slurm-slurmctld RPM on my head node it fails saying it requires the NVIDIA
control software. How do other folks work around this? Do you
Dear all,
thank you for your fast feedback. My initial idea was to run slurmctld and
slurmdb in respective KVMs and running while keeping the worker nodes
physical. From what I see that is a setup that works without problem.
However, I also find interesting some of the suggestions that you
Dear all,
In the expansion of our Cluster we are considering to install SLURM within a
virtual machine in order to simplify updates and reconfigurations.
Does any of your have experience running SLURM in VMs? I would really
appreciate if you could share your ideas and experiences.
Thanks a
from one
partition to another. That will allow that each job type, associated to an
account, starts differently in different partitions.
4. Once a job start in one partition, the other submitted jobs are killed and
get out of SLURM.
It’s a bit more work but gets the effect I am looking for: that
Hello Chris,
You got my point. I want a way in which a partition influences the priority
with a node takes new jobs.
Any tip will be really appreciated. Thanks a lot.
Cheers,
José
> On 23. Mar 2019, at 03:38, Chris Samuel wrote:
>
>> On 22/3/19 12:51 pm, Ole Holm N
Dear Ole,
Thanks for your fast reply. I really appreciate that.
I had a look at your website and googled about “weight masks” but still have
some questions.
From your example I see that the mask definition is commented out. How to
define what the mask means?
If helps, I’ll put an easy
Dear all,
I would like to create two partitions, A and B, in which node1 had a
certain weight in partition A and a different one in partition B. Does
anyone know how to implement it?
Thanks very much for the help!
Cheers,
José
Oh, thanks Paddy for your patch, it works very well !!
Miguel A. Sánchez Gómez
System Administrator
Research Programme on Biomedical Informatics - GRIB (IMIM-UPF)
Barcelona Biomedical Research Park (office 4.80)
Doctor Aiguader 88 | 08003 Barcelona (Spain)
Phone: +34/ 93 316 0522 | Fax: +34/ 93
Hi and thanks for all your answers and sorry for the delay in my answer.
Yesterday I have installed in the controller machine the Slurm-18.08.3
to check if with this last release the Seff command is working fine. The
behavior has improve but I still receive a error message:
# /usr/local/slurm
y the seff that was compiled in the 17.11.0 version
works fine. To compile the seff tool, from the source Slurm tree:
cd contrib
make
make install
I think the problem is in the perlapi. Could it be a bug? Any Idea about
how can I fix this problem? Thanks a lot.
--
Miguel A. Sánchez Gó
Ray
I'm also on Ubuntu. I'll try the same test, but do it with and without swap
on (e.g. by running the swapoff and swapon commands first). To complicate
things I also don't know if the swapiness level makes a difference.
Thanks
Ashton
On Sun, Sep 23, 2018, 7:48 AM Raymond Wan
Hi John! Thanks for the reply, lots to think about.
In terms of suspending/resuming, my situation might be a bit different than
other people. As I mentioned this is an install on a single node
workstation. This is my daily office machine. I run alot of python
processing scripts that have low CPU
I have a single node slurm config on my workstation (18 cores, 256 gb ram,
40 Tb disk space). I recently just extended the array size to its current
config and am reconfiguring my LVM logical volumes.
I'm curious on people's thoughts on swap sizes for a node. Redhat these
days recommend
Thinking about upgrading to Ubuntu 18.04 on my workstation, where I am
running a single node slurm setup. Any issues any one has run across in the
update?
Thanks!
ashton
I am just running an interactive job with "srun -I --pty /bin/bash" and
then run "echo $SLURM_MEM_PER_NODE", but it shows nothing. Does it have
to be defined in any conf file?
On 20/08/18 09:59, Chris Samuel wrote:
On Monday, 20 August 2018 4:43:57 PM AEST Juan A. C
That variable does not exist somehow on my environment. Is it possible
my Slurm version (17.02.3) does not include it?
Thanks
On 17/08/18 11:04, Bjørn-Helge Mevik wrote:
Yes. It is documented in sbatch(1):
SLURM_MEM_PER_CPU
Same as --mem-per-cpu
SLURM_MEM_PER_N
Dear Community,
does anyone know whether there is an environment variable, such as
$SLURM_CPUS_ON_NODE, but for the requested RAM (by using --mem argument)?
Thanks
Dear Slurm users,
Is it possible to allocate more resources for a current job on an
interactive shell? I just allocate (by default) 1 core and 2Gb RAM:
srun -I -p main --pty /bin/bash
The node and queue where the job is located has 120 Gb and 4 cores
available.
I just want to use more
Subject: [slurm-users] Getting nodes in a partition
Hi,
Is there any slurm variable to read the node names of a partition?
There is an MPI option --hostfile which we can write the node names.
I want to use something like this in the sbatch script:
#SBATCH --partition=MYPART
... --hostfile
nd
isolated this function as the culprit:
static void _setup_env_working_cluster(void)
With my configuration, this routine ended up performing a
strcmp of two NULL pointers, which seg-faults on our system (and is not
language-compliant
_setup_env_working_cluster(void)
With my configuration, this routine ended up performing a strcmp of two NULL
pointers, which seg-faults on our system (and is not language-compliant I would
think?). My current understanding is that this is a slurm bug.
The issue is rectifiable by simply giving the cluster
their scheduling targets; however, every now and again, we have a
user who has a relatively high-throughput (not HPC) workload that they're
willing to wait a significant period of time for. They're low-priority work,
but they put a few thousand jobs into the queue, and just sit and wait.
Dear all,
I am trying to set up a small cluster running slurm on Ubuntu 16.04.
I installed slurm-17.11.5 along with pmix-2.1.1 on an NFS-shared partition.
Installation seems fine. Munge is taken from the system package.
Something like this:
./configure --prefix=/software/slurm/slurm-17.11.5
Dear users,
I would like to force the use of only one type of shell, let's say,
bash, on a partition that shares a node with another one. Do you know if
it's possible to do it?
What I actually want to do is to install a limited shell (lshell) on one
node and force a given parti
We put SSSD caches on a RAMDISK which helped a little bit with performance.
- On 22 Jan, 2018, at 02:38, Alessandro Federico a.feder...@cineca.it wrote:
| Hi John,
|
| just an update...
| we not have a solution for the SSSD issue yet, but we changed the ACL
| on the 2 partitions from
I ended up with a more simple solution: I tweaked the program executable
(a bash script), so that it inspects which partition it is running on,
and if its the wrong one, it exits. Just added the following lines:
if [ $SLURM_JOB_PARTITION == 'big' ]; then
exi
But what if the user knows the path to such application (let's say
python command) and executes it on the partition he/she should not be
allowed to? Is it possible through lua scripts to set constrains on
software usage such as a limited shell, for instance?
In fact, what I'
Dear Community,
I have a node (20 Cores) on my HPC with two different partitions: big
(16 cores) and small (4 cores). I have installed software X on this
node, but I want only one partition to have rights to run it.
Is it then possible to restrict the execution of an specific application
to a
put in place.
-Paul Edmon-
On 1/4/2018 6:44 AM, Juan A. Cordero Varelaq wrote:
Hi,
A couple of jobs have been running for almost one month and I would
like to change resource limits to prevent users from running so much
time. Besides, I'd like to set AccountingStorageEnforce to qos
Hi,
A couple of jobs have been running for almost one month and I would like
to change resource limits to prevent users from running so much time.
Besides, I'd like to set AccountingStorageEnforce to qos,safe. If I make
such changes would the running jobs be stopped (the user runnin
Hi,
I have the following configuration:
* head node: hosts the slurmctld and the slurmdbd daemons.
* compute nodes (4): host the slurmd daemons.
I need to change a couple of lines of the slurm.conf corresponding to
the slurmctld. If I restart its service, should I also have to restart
the
Can someone provide an example of using the rpmbuild command while specifying
the slurm.spec-legacy file?
I need to build the new version of slurm for RHEL6 and need to invoke the
slurm.spec-legacy file (if possible) on this command line:
# rpmbuild -tb slurm-17.11.1.tar.bz2
Regards, Ruth
R. B
I guess mariadb-devel was not installed by the time another person
installed slurm. I have a bunch of slurm-* rpms I installed using "yum
localinstall ...". Should I installed them in another way or remove slurm?
The file accounting_storage_mysql.so is bythe way absent on the machin
0/11/17 12:11, Lachlan Musicman wrote:
On 20 November 2017 at 20:50, Juan A. Cordero Varelaq
mailto:bioinformatica-i...@us.es>> wrote:
$ systemctl start slurmdbd
Job for slurmdbd.service failed because the control process
exited with error code. See "systemctl st
Hi,
Slurm 17.02.3 was installed on my cluster some time ago but recently I
decided to use SlurmDBD for the accounting.
After installing several packages (slurm-devel, slurm-munge,
slurm-perlapi, slurm-plugins, slurm-slurmdbd and slurm-sql) and MariaDB
in CentOS 7, I created an SQL database:
I'm guessing you should have sent them to cluster Decepticon, instead
In all seriousness though, provide the conf file. You might have
accidentally set a maximum number of running jobs somewhere
On Nov 13, 2017 7:28 AM, "Benjamin Redling"
wrote:
> Hi Roy,
>
>
he IT team sent an email saying "complete network wide network outage tomorrow
night from 10pm across the whole institute".
Our plan is to put all queued jobs on hold, suspend all running jobs, and
turning off the login node.
I've just discovered that the partitions have a state,
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