Re: [slurm-users] prolog not passing env var to job

ahmet.mer...@uhem.itu.edu.tr wrote: > Prolog and TaskProlog are different parameters and scripts. You should > use the TaskProlog script to set env. variables. Can you tell me how to do this for srun? E.g. users request an interactive shell: srun -n 1 -t 600 --pty /bin/bash but the shell on

Re: [slurm-users] About sacct --format: how can I get info about the fields

man sacct shows us: -e, --helpformat     Print a list of fields that can be specified with the --format option. Brian Andrus On 3/3/2021 5:42 PM, xiaojingh...@163.com wrote: Hello, guys, I am doing a parsing job on the output of the sacct command and I know that the —format option can speci

[slurm-users] About sacct --format: how can I get info about the fields

Hello, guys, I am doing a parsing job on the output of the sacct command and I know that the —format option can specify the fields you'd like to be outputted. The difficulty I am facing is that I am in lack of info about the fields. For example, what are the possible values for those fields? Wha

Re: [slurm-users] Managing Multiple Dependencies

Dear Mike and Jan, Thank you for your suggestions. Mike, your script was close to what I had in mind, though way more elegant. So I appreciate it! Also Jan, thank you for pointing out snakemake. Apparently people do use it with Slurm, so I'm looking into it. Probably overkill at this point for mo

Re: [slurm-users] job submit location :: restricted to HOME?

Looks like the job ran. You should look at the output logs. My guess: The node the job ran on does not have access to that path. Log on to that node and check it out. Brian Andrus On 3/3/2021 1:21 AM, Adrian Sevcenco wrote: Hi! I just encountered the situation that i cannot submit jobs from

[slurm-users] Slurm upgrade to 20.11.3, slurmdbd still trying to start old version 20.02.3

Slurmdbd has an issue and from the logs is still trying to load the old version: [2021-01-22T14:17:18.430] MySQL server version is: 5.5.68-MariaDB [2021-01-22T14:17:18.433] error: Database settings not recommended values: innodb_buffer_pool_size innodb_log_file_size innodb_lock_wait_timeout [2021-0

Re: [slurm-users] sreport triggers "slurm_pack_list: size limit exceeded"

On 3/3/21 10:52 AM, Ulf Markwardt wrote: Dear all, at the moment, a more detailed sreport breaks like... sreport job SizesByAccount flatview grouping=1,2,4,8,24,32,48,64,128,250,500,1500,2000,2500,3000,3500,4000,4500,5000,7500 start=09/01/20 end=11/01/20 -t hours --parsable2 sreport: error: s

[slurm-users] sreport triggers "slurm_pack_list: size limit exceeded"

Dear all, at the moment, a more detailed sreport breaks like... sreport job SizesByAccount flatview grouping=1,2,4,8,24,32,48,64,128,250,500,1500,2000,2500,3000,3500,4000,4500,5000,7500 start=09/01/20 end=11/01/20 -t hours --parsable2 sreport: error: slurmdbd: Getting response to message type:

[slurm-users] job submit location :: restricted to HOME?

Hi! I just encountered the situation that i cannot submit jobs from other location than $HOME... i just have an exit of 1, and in slurmctld log i just see : _job_complete: JobId=30831 WEXITSTATUS 1 _job_complete: JobId=30831 done both the custom location and HOME are NFS shared and i checked cl