Snakemake is a tool to manage job dependencies. I don't have experience
using this in a slurm context, but I have used Snakemake to manage
complex depencies in workflows in other contexts. Snakemake should
support slurm.
HTH,
Jan
On 02-03-2021 20:16, Jason Simms wrote:
Hello all,
I am r
There may be prettier ways, but this gets the job done. Captures the output
from each sbatch command to get a job ID, colon separates the ones in the
second group, and removes the trailing colon before submitting the last job:
#!/bin/bash
JOB1=$(sbatch job1.sh | awk '{print $NF}')
echo "Submitt
Hello all,
I am relatively new to the nuances of handling complex dependencies in
Slurm, so I'm hoping the hive mind can help. I have a user wanting to
accomplish the following:
- submit one job
- submit multiple jobs that are dependent on the output from the first
job (so they just need
