Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Weiguang Chen
I did the default installaiton by yaourt. HDF5 is not necessary, I will try it again by without hdf5. Thanks. Chris Samuel 于2019年7月24日周三 下午12:57写道: > On Tuesday, 23 July 2019 7:47:33 PM PDT Weiguang Chen wrote: > > > I just reinstalled hdf5, but the error still exist. > > Are you going to use HD

Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Chris Samuel
On Tuesday, 23 July 2019 7:47:33 PM PDT Weiguang Chen wrote: > I just reinstalled hdf5, but the error still exist. Are you going to use HDF5 actively? If not tell configure not to use it by adding the --with-hdf5=no flag to your configure line. -- Chris Samuel : http://www.csamuel.org/ :

Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Weiguang Chen
Thanks for you fast response. I have installed hdf5 by pacman -S hdf5 (base) [zznu@archlinux ~]$ locate hdf5 /home/zznu/.virtualenvs/aiida/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat /home/zznu/magenta/lib/python2.7/site-packages/scipy/io/matlab/tests/data/testhdf

Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Philip Kovacs
Looks like you need to install hdf5, development headers and libraries. On Tuesday, July 23, 2019, 08:52:06 PM EDT, Weiguang Chen wrote: Hi,   I’m installing slurm in myArchlinux Server. At the beginning, I used AUR helper yaourt to install it. yaourt -S slurm-llnl But an error

[slurm-users] slurm-19.05 link error

2019-07-23 Thread Weiguang Chen
Hi, I’m installing slurm in my Archlinux Server. At the beginning, I used AUR helper yaourt to install it. yaourt -S slurm-llnl But an error occur while compiling sh5util, as follow: libtool: link: gcc -DNUMA_VERSION1_COMPATIBILITY -march=x86-64 -mtune=generic -O2 -pipe -pthread -ggdb3 -Wall

Re: [slurm-users] Weekend Partition

2019-07-23 Thread Matthew BETTINGER
Ok thanks for the reassurance. I had thought about your first partition idea vs the reservation. I was not sure if this was possible on the fly without updating the slurm.conf on each compute node without causing issues. On 7/23/19, 1:00 PM, "slurm-users on behalf of Daniel Letai" wrote:

Re: [slurm-users] Weekend Partition

2019-07-23 Thread Daniel Letai
I would use a partition with very low priority and preemption. General cluster conf: PreemptType=preempt/partition_prio Preemptmode=Cancel # Anything except 'Off' Partition definition: ParttionName=weekend PreemptMode=Cancel MaxTime=Unlimited

[slurm-users] Weekend Partition

2019-07-23 Thread Matthew BETTINGER
Hello, We run lsf and slurm here. For LSF we have a weekend queue with no limit and jobs get killed after Sunday. What is the best way to do something similar for slurm? Reservation? We would like to have any running jobs killed after Sunday if possible too. Thanks.