I agree that using the notebook is probably a bad idea. Have you tried
using sage's -c flag? according to the command line help "-c--
Evaluates cmd as sage code". In addition if you are using python you could
use the subprocess module. I'm thinking something like:
check_output(['/SAGEPAT
maybe this quick tutorial can be useful:
http://www.sagemath.org/doc/developer/producing_patches.html
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