[sage-devel] Re: R build error in 5.10 was Re: ATLAS build error on CentOS

2013-06-09 Thread leif
leif wrote: leif wrote: leif wrote: Ursula Whitcher wrote: ... gcc -std=gnu99 -shared -fopenmp -o libR.so CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o co

Re: [sage-devel] Re: R build error in 5.10 was Re: ATLAS build error on CentOS

2013-06-06 Thread Ursula Whitcher
On 6/5/2013 10:13 PM, leif wrote: Ursula, can you confirm that `LIBRARY_PATH` is set in your shell? E.g., what does the following give? $ ./sage --sh -c 'echo $LIBRARY_PATH' /home/whitchua/sage-5.10.rc0/local/lib --Ursula. -- You received this message because you are subscribed to the Goo

Re: [sage-devel] Re: R build error in 5.10 was Re: ATLAS build error on CentOS

2013-06-06 Thread Ursula Whitcher
On 6/5/2013 8:50 PM, leif wrote: This appears to be an upstream bug; despite that we configure with '--with-readline="$SAGE_LOCAL"', the corresponding '-L...' is missing in the linker command such that your system's libreadline gets picked up. You can try: $ env LDFLAGS="-L/home/whitchua/sage-

[sage-devel] Re: R build error in 5.10 was Re: ATLAS build error on CentOS

2013-06-05 Thread leif
leif wrote: leif wrote: Ursula Whitcher wrote: ... gcc -std=gnu99 -shared -fopenmp -o libR.so CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o

[sage-devel] Re: R build error in 5.10 was Re: ATLAS build error on CentOS

2013-06-05 Thread leif
leif wrote: Ursula Whitcher wrote: ... gcc -std=gnu99 -shared -fopenmp -o libR.so CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o

[sage-devel] Re: R build error in 5.10 was Re: ATLAS build error on CentOS

2013-06-05 Thread leif
Ursula Whitcher wrote: On 6/5/2013 11:39 AM, William Stein wrote: Given that she is having build issues, I strongly recommend just building a clean sage-5.10.rc0 from scratch. There may be (many?) changes to the Sage library, etc., that are related to updated ATLAS for the first time in years,