I'd be happy to, although I will have a pro-positive review bias.
-Marshall
On Oct 11, 4:50 am, MaxTheMouse wrote:
> I have put up a new package
> athttp://sage.math.washington.edu/home/awebb/biopython-1.52.p0.spkg
> if someone would like to review it.
>
> Adam
--~--~-~--~~
I have put up a new package at
http://sage.math.washington.edu/home/awebb/biopython-1.52.p0.spkg
if someone would like to review it.
Adam
--~--~-~--~~~---~--~~
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On Sat, Oct 10, 2009 at 11:09 AM, MaxTheMouse
wrote:
>
>
>
> On Oct 10, 7:38 pm, Robert Bradshaw
> wrote:
>> There is an #optional directive one can pyt on doctests so they get
>> run (and output tested) only if the user has installed the package.
>> Sounds like that's what we should be using he
On Oct 10, 7:38 pm, Robert Bradshaw
wrote:
> There is an #optional directive one can pyt on doctests so they get
> run (and output tested) only if the user has installed the package.
> Sounds like that's what we should be using here.
>
> - Robert
>
Unfortunately, these are not run by Sage
There is an #optional directive one can pyt on doctests so they get
run (and output tested) only if the user has installed the package.
Sounds like that's what we should be using here.
- Robert
On Oct 10, 2009, at 6:20 AM, MaxTheMouse wrote:
> I decided to try patching the test but I now re
I decided to try patching the test but I now realise that test_Wise.py
is not actually the problem. In fact since I don't have the WISE2
software installed that test is skipped. The actual test is in the doc
string of the module.
"""
>>> os.environ["WISE_KBYTE"]="30"
>>> _build_align
On Oct 9, 10:24 pm, Marshall Hampton wrote:
> One alternative would be to patch the test_Wise.py file so that
> instead of
>
> self.assert_(sys.stdout.getvalue().startswith("dnal -kbyte 10
> seq1.fna seq2.fna"))
>
> within test_dnal we'd have
>
> self.assert_(sys.stdout.getvalue().startswit
One alternative would be to patch the test_Wise.py file so that
instead of
self.assert_(sys.stdout.getvalue().startswith("dnal -kbyte 10
seq1.fna seq2.fna"))
within test_dnal we'd have
self.assert_(sys.stdout.getvalue().startswith("dnal -kbyte 10")
and similarly for test_psw. That wou
