[Rpy] os.system() fails after importing rpy

Hey All - I'd really love to get some insight into this, I'm just totally puzzled! I'm trying to make system calls to clustalw, a sequence aligner which takes arguments like filenames. The main point is just that I need to make a system call, and I need to have a blank space before the arguments

Re: [Rpy] os.system() fails after importing rpy

lickering window and I'm quite sure as to what the error was.) -Erez On 4/17/07, Gregory Warnes < [EMAIL PROTECTED]> wrote: Hello Erez, On Apr 17, 2007, at 3:56PM , Erez Lieberman wrote: > Hey All - > > I'd really love to get some insight into this, I'm jus

[Rpy] os.system() fails after importing rpy

Hey All - I'd really love to get some insight into this, I'm just totally puzzled! I'm trying to make system calls to clustalw, a sequence aligner which takes arguments like filenames. The main point is just that I need to make a system call, and I need to have a blank space before the argument

Re: [Rpy] os.system() fails after importing rpy

Sorry, I copy/pasted the text from the wrong place, which is why the slashes incorrectly were there. They definitely were not there in producing the bug. I just ran it again. I restarted the shell, and then: >>> import os; os.system('Z:\Data\ClustalW\\clustalw >>> Z:\Data\Output\\junk.fasta')