Re: [Rpy] r call stalls in Pytonwin

2009-09-25 Thread Jon Hak
Laurent, It is the last line of the example which is the vegdist function. I did find on a smaller input matrix it works fines. I mucked around with it a little more last night and I narrowed it down to somewhere in the last 354 rows (total 2854 rows x 11 cols) of the input matrix. I don't se

Re: [Rpy] r call stalls in Pytonwin

2009-09-25 Thread Laurent Gautier
It is surprising that you observe a time difference between rpy and R for the code you are showing and for the same dataset (and presumably in the same conditions - that is you are not running a huge process while trying rpy but not when trying R). What you are doing is evaluate R code in a stri