Re: [Rpy] problem installing rpy2 on OS X

2013-01-25 Thread Jean-Baptiste Marquette
Hi Jeremy, The message > make: command not found indicates maybe your Xcode is not properly set. Did you check the command xcode-select ? Have a look to xcode-select --print-path /Applications/Xcode.app/Contents/Developer Cheers JB > Hi, > > I have had a problem installing Rpy2 versions

Re: [Rpy] problem installing rpy2 on OS X, this time with line breaks

2013-01-24 Thread Jeremy Harbinson
Hi, A possible fix has been to re-install the Xcode command line tools: rpy2 seems now to install and work, though I confess that all the reports of the Xcode tools show no change in version number etc following the re-install. Still, it has worked. Jeremy On 24 Jan 2013, at 15:55, Jeremy Harb

Re: [Rpy] Problem installing rpy2 after upgrade to 11.10

2011-11-17 Thread Bruno Santos
It was actually compiled as a shared library but I believe the problem was that I had installed previously from the packages repository as well so I got several versions installed. Even after removing rpy2 and R through the software centre and uninstall my installation from source I could still use

Re: [Rpy] Problem installing rpy2 after upgrade to 11.10

2011-11-16 Thread Laurent Gautier
Let me guess: R was not compiled as a shared library. http://rpy.sourceforge.net/rpy2/doc-2.2/html/overview.html#req Try Dirk Eddelbuettel's debian packages. http://cran.r-project.org/bin/linux/ubuntu/README The latest rpy2 release has so far always be there within days. L. On 2011-11-14 16:

Re: [Rpy] Problem installing rpy2 on Mac OS X Snow Leopard with homebrew R

2011-02-28 Thread Laurent Gautier
On 2/28/11 11:14 PM, Uri Laserson wrote: > I am trying to install rpy2 on my Mac OS X Snow Leopard machine. > > I am using homebrew to build all my packages from source, including R. > > I tried `pip install rpy2` and get the following output: > https://gist.github.com/848119 > > Any ideas what the

Re: [Rpy] Problem Installing rpy2 on a MAc OS X 10.5.8

2010-10-13 Thread Alon philosof
Tried to install the version from pypi, and it worked! thanks so much. Just to note though, I have updated several dependencies that might facilitated rpy2 2.1.7 to finally work. On Oct 13, 2010, at 11:25 AM, Laurent Gautier wrote: > On 10/13/10 10:07 AM, Alon philosof wrote: >> Thanks for the

Re: [Rpy] Problem Installing rpy2 on a MAc OS X 10.5.8

2010-10-13 Thread Laurent Gautier
On 10/13/10 12:56 PM, Brad Chapman wrote: > Alon and Laurent; > >>> I get this when trying easy_install: >>> Searching for rpy2 >>> Best match: rpy2 2.1.0alpha3 >>> Adding rpy2 2.1.0alpha3 to easy-install.pth file >> >> Strange. The latest release is 2.1.7. >> Can you fetch it from Pypi then ? > >

Re: [Rpy] Problem Installing rpy2 on a MAc OS X 10.5.8

2010-10-13 Thread Brad Chapman
Alon and Laurent; > > I get this when trying easy_install: > > Searching for rpy2 > > Best match: rpy2 2.1.0alpha3 > > Adding rpy2 2.1.0alpha3 to easy-install.pth file > > Strange. The latest release is 2.1.7. > Can you fetch it from Pypi then ? I can't help with the OS X build problems, but the

Re: [Rpy] Problem Installing rpy2 on a MAc OS X 10.5.8

2010-10-13 Thread Laurent Gautier
On 10/13/10 10:07 AM, Alon philosof wrote: > Thanks for the reply. > I get this when trying easy_install: > Searching for rpy2 > Best match: rpy2 2.1.0alpha3 > Adding rpy2 2.1.0alpha3 to easy-install.pth file Strange. The latest release is 2.1.7. Can you fetch it from Pypi then ? > Using /Library

Re: [Rpy] Problem Installing rpy2 on a MAc OS X 10.5.8

2010-10-13 Thread Alon philosof
Thanks for the reply. I get this when trying easy_install: Searching for rpy2 Best match: rpy2 2.1.0alpha3 Adding rpy2 2.1.0alpha3 to easy-install.pth file Using /Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/ site-packages Processing dependencies for rpy2 Finished processing dep

Re: [Rpy] Problem Installing rpy2 on a MAc OS X 10.5.8

2010-10-13 Thread Laurent Gautier
From the output, this seems to be an older release you are trying to install. What would give today ? easy_install rpy2 give On 10/13/10 9:38 AM, Alon philosof wrote: > Hello, > I'm bumping a question I've posted on stackexchange and biostar but > still can't solve. > before I give up I thoug

Re: [Rpy] problem installing rpy2

2008-09-04 Thread laurent
Just for reference (since running at this stage running the SVN version is a bit better). I updated rpy2-2.0a3 tarball to include the headers. The fix to built source distributions is also in SVN. Thanks for reporting that files were missing, L. On Tue, 2008-09-02 at 10:09 -0700, Nicholas

Re: [Rpy] problem installing rpy2

2008-09-03 Thread laurent
On Wed, 2008-09-03 at 09:49 +0200, Robert Nuske wrote: > Hi laurent, > > I just opend my mail-program to write you that I had to > delete 'Rlapack', 'Rblas' to make the setup.py finally work, when I saw the > note about your change in svn. > > I checked out revision 649. > And yes, I can confir

Re: [Rpy] problem installing rpy2

2008-09-03 Thread Robert Nuske
Hi laurent, I just opend my mail-program to write you that I had to delete 'Rlapack', 'Rblas' to make the setup.py finally work, when I saw the note about your change in svn. I checked out revision 649. And yes, I can confirm it works now ;-) I was wondering about line 107 in setup.py include_

Re: [Rpy] problem installing rpy2

2008-09-02 Thread laurent
On Tue, 2008-09-02 at 12:52 -0500, Dirk Eddelbuettel wrote: > On 2 September 2008 at 18:26, Robert Nuske wrote: > | > I may have seen that one problem mentioned earlier to the list. > | me to, but can't find it now > | > | > The location of R's include files is seemingly a bit too exotic for the

Re: [Rpy] problem installing rpy2

2008-09-02 Thread Dirk Eddelbuettel
On 2 September 2008 at 20:01, laurent wrote: | I have it working with --cppflags on ubuntu (and that's debian-based, | isn't it ?) Right. But the -lRlapack vs -llapack switch only happened more recently at Ubuntu 8.04, so on older systems you wouldn't have seen it yet. | rpy2's setup.py is gett

Re: [Rpy] problem installing rpy2

2008-09-02 Thread laurent
On Tue, 2008-09-02 at 18:26 +0200, Robert Nuske wrote: > Hi laurent, > > > > > I found them here: > > > /usr/share/R/include/Rdefines.h > > > /usr/share/R/include/Rinternals.h > > > /usr/share/R/include/R.h > > > > I may have seen that one problem mentioned earlier to the list. > me to, but can't

Re: [Rpy] problem installing rpy2

2008-09-02 Thread Dirk Eddelbuettel
On 2 September 2008 at 18:26, Robert Nuske wrote: | > I may have seen that one problem mentioned earlier to the list. | me to, but can't find it now | | > The location of R's include files is seemingly a bit too exotic for the | > disutils script. | they were placed there by the debian package

Re: [Rpy] problem installing rpy2

2008-09-02 Thread laurent
On Tue, 2008-09-02 at 10:09 -0700, Nicholas Lewin-Koh wrote: > Hi, > Silly me! > I just checked svn, and I was using the rpy-2.0a3 tar ball. > All the .h files are missing in rpy/rinterfaces. Ooops... Obviously it tells that most of the people are *not* relying on the tarballs... > Nicholas

Re: [Rpy] problem installing rpy2

2008-09-02 Thread Nicholas Lewin-Koh
Hi, Silly me! I just checked svn, and I was using the rpy-2.0a3 tar ball. All the .h files are missing in rpy/rinterfaces. Nicholas On Tue, 02 Sep 2008 09:56:41 -0700, "Nicholas Lewin-Koh" <[EMAIL PROTECTED]> said: > Hi, > I had the similar problems with on ubuntu. When I set RHOME manually, > e

Re: [Rpy] problem installing rpy2

2008-09-02 Thread Nicholas Lewin-Koh
Hi, I had the similar problems with on ubuntu. When I set RHOME manually, export RHOME=/usr/local/lib64/R I got problems with finding one of the headers, specifically in rpy/interface/array.c changing #include "rinterface.h" to include #include got around my first errors but I am noit sure that

Re: [Rpy] problem installing rpy2

2008-09-02 Thread Robert Nuske
Hi laurent, > > I found them here: > > /usr/share/R/include/Rdefines.h > > /usr/share/R/include/Rinternals.h > > /usr/share/R/include/R.h > > I may have seen that one problem mentioned earlier to the list. me to, but can't find it now > The location of R's include files is seemingly a bit too e

Re: [Rpy] problem installing rpy2

2008-09-02 Thread laurent
On Tue, 2008-09-02 at 11:05 +0200, Robert Nuske wrote: > Am Dienstag, 2. September 2008 10:43:48 schrieben Sie: > > On Tue, 2008-09-02 at 10:21 +0200, Robert Nuske wrote: > > > Hi, > > > > > > there are rumors that "Django seems to be working with rpy2 on linux" so > > > I tried to install rpy2-2.0

Re: [Rpy] problem installing rpy2

2008-09-02 Thread Robert Nuske
Am Dienstag, 2. September 2008 10:43:48 schrieben Sie: > On Tue, 2008-09-02 at 10:21 +0200, Robert Nuske wrote: > > Hi, > > > > there are rumors that "Django seems to be working with rpy2 on linux" so > > I tried to install rpy2-2.0.0a3 and also the revision 647 of rpy_nextgen. > > > > Debian testi

Re: [Rpy] problem installing rpy2

2008-09-02 Thread laurent
On Tue, 2008-09-02 at 10:21 +0200, Robert Nuske wrote: > Hi, > > there are rumors that "Django seems to be working with rpy2 on linux" so I > tried to install rpy2-2.0.0a3 and also the revision 647 of rpy_nextgen. > > Debian testing with R 2.7.1-1+lenny1 and python 2.5.2-2. > > With both rpy ve