Hi Fangyu,
I use Win7, not sure if it works but thanks for the suggestion.
Y.Z.
On Tue, Mar 27, 2012 at 3:47 PM, Fangyu He wrote:
> Dear Yuanda Zhu
>
> I did never do install rpy2 to Python3, but I got it for Python2.7 easily
> with the help of apt-get before. I think that you may try it if y
Dear Yuanda Zhu
I did never do install rpy2 to Python3, but I got it for Python2.7
easily with the help of apt-get before. I think that you may try it if
your os is ubuntu or its likes. I hope it does work, which doesn't take
much time. The following is the code used in terminal.
sudo apt
I see. Thank you very much for your help though!
Y.Z.
On Mon, Mar 26, 2012 at 8:45 PM, Thomas Kluyver wrote:
> I guess you'll need to comment out the section where it's called:
> https://bitbucket.org/lgautier/rpy2/src/f075a4291e9c/setup.py#cl-151
>
> I'll try to have a look at this when I've g
I guess you'll need to comment out the section where it's called:
https://bitbucket.org/lgautier/rpy2/src/f075a4291e9c/setup.py#cl-151
I'll try to have a look at this when I've got some spare time, but it
might be a Windows specific problem, which I'm less able to debug.
Thomas
On 26 March 2012
Hi Thomas,
Here is the new error message with no if statement:
File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 187, in
get_r
version
rversion = m.groups()[0]
AttributeError: 'NoneType' object has no attribute 'groups'
Y.Z.
On Mon, Mar 26, 2012 at 8:27 PM, Niek de Klein w
Try it without the if statement:
r_exec = os.path.join(r_home, 'bin', 'R')
# Changed ---
import subprocess
rp = subprocess.check_output([r_exec, '--version'],
stderr=subprocess.STDOUT).decode('ascii').splitlines()
# removed the if statement
rversion = rp[1]
#
Hi Thomas,
I tried your updated code and rpy2 still can't be installed properly. I
searched on the internet and it can be solved by ignore check rversion. Do
you know how to do it?
Many thanks,
Y.Z.
On Mon, Mar 26, 2012 at 7:29 PM, Thomas Kluyver wrote:
> Updated gist. https://gist.github.com
Updated gist. https://gist.github.com/2204230
On 26 March 2012 12:06, Yuanda Zhu wrote:
> Hi Thomas,
>
> Thank you very much for your code. I ran it and it showed that
>
>
> File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 183, in
> get_rversion
> if rversion.startswith("WAR
Hi Thomas,
Thank you very much for your code. I ran it and it showed that
File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 183, in
get_rversion
if rversion.startswith("WARNING"):
TypeError: startswith first arg must be bytes or a tuple of bytes, not str
Please help.
Than
On 26 March 2012 10:50, Thomas Kluyver wrote:
> I haven't tested this, but it should be something like:
Email formatting mangled that a bit. Here it is in a pastebin:
https://gist.github.com/2204230
Thomas
--
This SF em
I haven't tested this, but it should be something like:
r_exec = os.path.join(r_home, 'bin', 'R')
# Changed ---
import subprocess
rp = subprocess.check_output([r_exec, '--version'],
stderr=subprocess.STDOUT).splitlines()
rversion = rp[0]
#Twist if 'R RHOME' spit
Hi Thomas,
Please excuse my limited knowledge. I do not quite know how to replace it.
Could you please write the full syntax for me? By the way, is this a
compatibility problem between Python 3.2.2 and rpy2?
Many thanks,
Y.Z.
On Mon, Mar 26, 2012 at 5:02 AM, Thomas Kluyver wrote:
> Hi Yuanda,
Hi Yuanda,
You should edit setup.py to use subprocess.check_output() instead of
os.popen3(). Note that it's not a direct replacement - popen3 returns
a file-like object with a readline method; check_output() returns a
string (use s.splitlines() to make a list of lines).
For reference, you can see
Hi Thomas,
Here is the traceback:
Traceback (most recent call last):
File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 462, in
[os.path.join('doc', 'source', 'rpy2_logo.png')])],
File "F:\Python32\lib\distutils\core.py", line 148, in setup
dist.run_commands()
File "F
Hi Niek,
Here is the Traceback
Traceback (most recent call last):
File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 462, in
[os.path.join('doc', 'source', 'rpy2_logo.png')])],
File "F:\Python32\lib\distutils\core.py", line 148, in setup
dist.run_commands()
File "F:\
On 25 March 2012 20:17, Yuanda Zhu wrote:
> AttributeError:'module' object has no attribute 'popen3'
Can you post the traceback that goes with this? It's most likely a bug
somewhere, as popen3 calls should be replaced using the subprocess
module (see
http://docs.python.org/library/subprocess.htm
Hi Niek,
Actually, after I changed the path of R, the error msg appeared to be
*AttributeError:'module'
object has no attribute 'popen3'*
Do you know how to solve this problem?
Many thanks,
Y.Z.
*
*On Sun, Mar 25, 2012 at 7:27 PM, Niek de Klein wrote:
> Hi Yuanda,
>
> I haven't had this problem
Hi Niek,
I have tried those, but it seems that the methods in that thread don't work
on my situation.
Thank you very much, Niek.
Y.Z.
On Sun, Mar 25, 2012 at 7:27 PM, Niek de Klein wrote:
> Hi Yuanda,
>
> I haven't had this problem myself so I don't know if the solutions given
> here:
> http:/
Hi Yuanda,
I haven't had this problem myself so I don't know if the solutions given
here:
http://stackoverflow.com/questions/4924917/trouble-installing-rpy2-on-win7-r-2-12-python-2-5.
actually work, but it seems like a solution.
Cheers,
Niek
On Sun, Mar 25, 2012 at 8:47 AM, Yuanda Zhu wrote:
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