On 2012-07-26 10:10, Laurent Gautier wrote:
On 2012-07-26 10:04, Nick Schurch wrote:
You were of couse correct. stale ldconf settings were the issue. we
have it now sucessfully running on 2.15.1! Thanks.
Have you had rpy2 successfully running vs the development (2.16)
version yet?
I have not
On 2012-07-26 10:04, Nick Schurch wrote:
You were of couse correct. stale ldconf settings were the issue. we
have it now sucessfully running on 2.15.1! Thanks.
Have you had rpy2 successfully running vs the development (2.16)
version yet?
I have not tried yet. If the C-API for R did not change
You were of couse correct. stale ldconf settings were the issue. we have it
now sucessfully running on 2.15.1! Thanks.
Have you had rpy2 successfully running vs the development (2.16) version
yet?
Nick
On 26 July 2012 06:04, Laurent Gautier wrote:
> The thread seems to be continuing on stacko
The thread seems to be continuing on stackoverflow:
http://stackoverflow.com/questions/11658687/ld-library-path-precendence-and-trouble-with-compiling
On Jul 25, 2012 3:23 PM, "Nick Schurch" wrote:
> Hi
>
> I don't think rebuilding rpy2 is the problem... We compiled rpy2 against R
> 2.15.0 and 2
Hi
I don't think rebuilding rpy2 is the problem... We compiled rpy2 against R
2.15.0 and 2.15.1 and it still gives this error both times. Attempting to
build rpy2 against R 2.16 (the development version) gives build errors.
Nick
On 25 July 2012 10:07, Laurent Gautier wrote:
> On 2012-07-25 10
On 2012-07-25 10:54, Nick Schurch wrote:
Both of those produce the same error... or at least they did until we
realised that path for R was wrong. we had it installed in
/sw/bin/R2.15.0 but the Renviron file was in /sw/bin/R2.15.0/lib64/R.
Setting R_HOME to this has sorted it.
Now I have the
Both of those produce the same error... or at least they did until we
realised that path for R was wrong. we had it installed in /sw/bin/R2.15.0
but the Renviron file was in /sw/bin/R2.15.0/lib64/R. Setting R_HOME to
this has sorted it.
Now I have the entirely different issue of rpy2 not working w
May be a mismatch between the R library rpy2 was built against. It
should not segfault thought.
Can you try:
import rpy2.rinterface
# Does this give a version number for R that you would expect ?
print(rpy2.rinterface.R_VERSION_BUILD)
# Does this complete without a crash ?
print(rpy2.rinterface
Hi,
I've installed rpy2 (2.2.4) with python 2.6.4 against R2.11 on centos 5.6.
When I import rpy2 it works fine, but when I try to run tests or anything
else : get:
>>> import rpy2
>>> rpy2.__path__
['/local/lib/python2.6/site-packages/rpy2']
>>> import rpy2.tests
cannot find system Renviron
Fata
