I have code using version 2.8.6 that uses robjects, But in version 2.9
and higher that method does not seem to exist. Has the interface
changed?
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Is there a package I can install (on debian) that will allow me to run
a R script that uses doby with rpy2?
If I try that it fails with:
there is no package called 'doBy'
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Anyone out there who can help us with this? We really need to get rpy running.
On Sun, Jul 16, 2017 at 6:22 PM, Larry Martell wrote:
> I also tried building rpy2 from source and that failed with:
>
> gcc -pthread -shared
> build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o
&g
> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsoleEx’:
>
> ./rpy/rinterface/_rinterface.c:339: warning: ‘consolecallback’ may
> be used uninitialized in this function
>
> ./rpy/rinterface/_rinterface.c:354: warning: ‘gstate’ may be used
> uninitial
tatus
error: command 'gcc' failed with exit status 1
Command "/usr/local/bin/python2.7 -u -c "import setuptools,
tokenize;__file__='/tmp/pip-build-eFwk3n/rpy2/setup.py';exec(compile(getattr(tokenize,
'open
I figured this out. I had to do 'apt-get install r-cran-caret' and now it works!
On Fri, Jul 14, 2017 at 10:15 AM, Larry Martell wrote:
> Running this test script and it's throwing the exceptions shown. This
> is debian 10 with R 3.3.3, python 2.7. Can anyone offer any ide
Running this test script and it's throwing the exceptions shown. This
is debian 10 with R 3.3.3, python 2.7. Can anyone offer any ideas on
what is wrong?
mport rpy2.robjects as robjects
stroke = robjects.r('''
load(file.path("/opt/django/CAPgraph/capdata/lib/RPredictions/",
"logisticRegre
there is a warning about the R version being too old for support
> with that version of rpy2 ( maybe it will work, maybe it won't).
>
> On Mon, Jul 10, 2017, 11:18 AM Larry Martell
> wrote:
>>
>> Trying to install rpy2 on redhat 6.7. I have R version 3.1.0:
>&
Trying to install rpy2 on redhat 6.7. I have R version 3.1.0:
$ R --version
R version 3.1.0 (2014-04-10) -- "Spring Dance"
Here is what I get from pip2.7 install rpy2:
$ pip install rpy2
Collecting rpy2
Downloading rpy2-2.8.6.tar.gz (191kB)
100% || 194kB 1