[Rpy] robjects

2019-09-05 Thread Larry Martell
I have code using version 2.8.6 that uses robjects, But in version 2.9 and higher that method does not seem to exist. Has the interface changed? ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-li

[Rpy] doBy

2017-11-01 Thread Larry Martell
Is there a package I can install (on debian) that will allow me to run a R script that uses doby with rpy2? If I try that it fails with: there is no package called 'doBy' -- Check out the vibrant tech community on one of

Re: [Rpy] rpy2 install on redhat 6.7

2017-07-19 Thread Larry Martell
Anyone out there who can help us with this? We really need to get rpy running. On Sun, Jul 16, 2017 at 6:22 PM, Larry Martell wrote: > I also tried building rpy2 from source and that failed with: > > gcc -pthread -shared > build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o &g

Re: [Rpy] rpy2 install on redhat 6.7

2017-07-16 Thread Larry Martell
> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsoleEx’: > > ./rpy/rinterface/_rinterface.c:339: warning: ‘consolecallback’ may > be used uninitialized in this function > > ./rpy/rinterface/_rinterface.c:354: warning: ‘gstate’ may be used > uninitial

Re: [Rpy] rpy2 install on redhat 6.7

2017-07-16 Thread Larry Martell
tatus error: command 'gcc' failed with exit status 1 Command "/usr/local/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-eFwk3n/rpy2/setup.py';exec(compile(getattr(tokenize, 'open

Re: [Rpy] Help with script exception

2017-07-14 Thread Larry Martell
I figured this out. I had to do 'apt-get install r-cran-caret' and now it works! On Fri, Jul 14, 2017 at 10:15 AM, Larry Martell wrote: > Running this test script and it's throwing the exceptions shown. This > is debian 10 with R 3.3.3, python 2.7. Can anyone offer any ide

[Rpy] Help with script exception

2017-07-14 Thread Larry Martell
Running this test script and it's throwing the exceptions shown. This is debian 10 with R 3.3.3, python 2.7. Can anyone offer any ideas on what is wrong? mport rpy2.robjects as robjects stroke = robjects.r(''' load(file.path("/opt/django/CAPgraph/capdata/lib/RPredictions/", "logisticRegre

Re: [Rpy] rpy2 install on redhat 6.7

2017-07-10 Thread Larry Martell
there is a warning about the R version being too old for support > with that version of rpy2 ( maybe it will work, maybe it won't). > > On Mon, Jul 10, 2017, 11:18 AM Larry Martell > wrote: >> >> Trying to install rpy2 on redhat 6.7. I have R version 3.1.0: >&

[Rpy] rpy2 install on redhat 6.7

2017-07-10 Thread Larry Martell
Trying to install rpy2 on redhat 6.7. I have R version 3.1.0: $ R --version R version 3.1.0 (2014-04-10) -- "Spring Dance" Here is what I get from pip2.7 install rpy2: $ pip install rpy2 Collecting rpy2 Downloading rpy2-2.8.6.tar.gz (191kB) 100% || 194kB 1