Re: [Rpy] importr regression in 2.3?

2013-03-12 Thread Laurent Gautier
On 2013-03-12 17:25, Luca Beltrame wrote: > In data martedì 12 marzo 2013 17:23:12, Laurent Gautier ha scritto: > >> - There is something odd happening with the names of those datasets >> (probably an error in rpy2) > Do you want me to open a bug on bitbucket to ensure this quirk is not > forgotten

Re: [Rpy] importr regression in 2.3?

2013-03-12 Thread Luca Beltrame
In data martedì 12 marzo 2013 17:23:12, Laurent Gautier ha scritto: > - There is something odd happening with the names of those datasets > (probably an error in rpy2) Do you want me to open a bug on bitbucket to ensure this quirk is not forgotten in case someone else bumps into it? > kegg_env

Re: [Rpy] importr regression in 2.3?

2013-03-12 Thread Laurent Gautier
On 2013-03-12 16:44, Luca Beltrame wrote: Hello, I've been using "importr" successfully with the 2.2.x series, but since upgrading today to the 2.3.x series I noticed a change in behavior. I noticed this with the "graphite" package from Bioconductor: graphite = importr("graphite") This packag

Re: [Rpy] importr regression in 2.3?

2013-03-12 Thread Luca Beltrame
In data martedì 12 marzo 2013 17:07:39, Laurent Gautier ha scritto: Hello Laurent, > The error message in full would certainly help guessing what is happening. Simply put, this list vector used to be loaded in the package namespace, but is not loaded anymore on package import. >>> hasattr(gra

Re: [Rpy] importr regression in 2.3?

2013-03-12 Thread Laurent Gautier
On 2013-03-12 17:06, Luca Beltrame wrote: In data martedì 12 marzo 2013 17:03:26, Luca Beltrame ha scritto: This package provides a series of classes, in this case I wanted to access the "kegg" class. Just as a small correction, it's a R "list" containing classes. It's present in the package e

Re: [Rpy] importr regression in 2.3?

2013-03-12 Thread Luca Beltrame
In data martedì 12 marzo 2013 17:03:26, Luca Beltrame ha scritto: > This package provides a series of classes, in this case I wanted to access > the "kegg" class. Just as a small correction, it's a R "list" containing classes. It's present in the package environment but not loaded by importr. –

[Rpy] importr regression in 2.3?

2013-03-12 Thread Luca Beltrame
Hello, I've been using "importr" successfully with the 2.2.x series, but since upgrading today to the 2.3.x series I noticed a change in behavior. I noticed this with the "graphite" package from Bioconductor: graphite = importr("graphite") This package provides a series of classes, in this cas