On Thu, 10 Jan 2013 20:00:44 +0100 (CET), Samuel Lampa wrote:
> Ah, many thanks! :)
A comment: if you're using R just to do a hypergeometric test, probably
the R-Python overhead is not worth the effort. Scipy has the exact same
function, with the advantage that you don't have to go through
On 01/10/2013 06:56 PM, Laurent Gautier wrote:
> dots ('.') are not valid symbol name in Python.
> http://rpy.sourceforge.net/rpy2/doc-dev/html/robjects_functions.html?highlight=dot#functions
>
Ah, many thanks! :)
// Samuel
--
Developer at SNIC-UPPMAX www.uppmax.uu.se
Developer at Dept of Pha
On Wed, Jan 2, 2013 at 3:20 AM, oneswarm1988 wrote:
> **
> hello everyone:
>
> *I wonder if there is a method that could export the robjects created
> from python to R , so that I can use the robjects directly in R code .*
>
> for example : df= DataFrame(xx) is a data frame created in python ,
On 2013-01-10 18:22, Samuel Lampa wrote:
> Hi,
>
> I'm tryint to do a "pypher" calculation from my python script, for some
> gene expression stuff.
>
> In R, I would call it like this:
> phyper(q, m, n, k, lower.tail=FALSE, log.p=FALSE)
>
> How do I format the two last parameters, in python?
>
> Th
Hi,
I'm tryint to do a "pypher" calculation from my python script, for some
gene expression stuff.
In R, I would call it like this:
phyper(q, m, n, k, lower.tail=FALSE, log.p=FALSE)
How do I format the two last parameters, in python?
The four first ones seems simple:
p = r.phyper(q, m, n, k)
