Re: [Rpy] segmentation fault after long batch of LM

I am running things with a call to gc() before each regression, in case what happens is a race condition where the gc is called in the middle of the constrction of a new dataframe... Thanks for the prompt help! Laurent 2008/7/14 Laurent Gautier <[EMAIL PROTECTED]>: > 2008/7/15 laurent oget <[EM

Re: [Rpy] Cannot call R function from Python CGI script

Sorry, here's the exact error message: **: Couldn't execute the R interpreter `sh: R: command not found/bin/R'. Thanks. On Mon, Jul 14, 2008 at 6:25 PM, Saket <[EMAIL PROTECTED]> wrote: > Hi, > > I was wondering if someone could help with this problem. I installed R, and > and am able to use it

Re: [Rpy] segmentation fault after long batch of LM

2008/7/15 laurent oget <[EMAIL PROTECTED]>: > can i get a quick hint on how i would go about calling --verbose through RPY > ? I suspect that the only way is to hack line 93 of rpymodule.c char *defaultargv[] = {"rpy", "-q", "--vanilla"}; and recompile/install rpy. > I am pretty clueless about

[Rpy] Cannot call R function from Python CGI script

Hi, I was wondering if someone could help with this problem. I installed R, and and am able to use it successfully in a regular Python program after importing it using "import rpy". However, when I try to do "import rpy" from a Python cgi script, I get an error which says: Couldn't execute the R i

Re: [Rpy] segmentation fault after long batch of LM

can i get a quick hint on how i would go about calling --verbose through RPY ? I am pretty clueless about the way R does the garbage collection. One thing I know is there are columns that are shared between different linear regressions, so it might be that the garbage collector cleans up a column

Re: [Rpy] rpy and mod_python problem

I have tried ulimit -s values of up to 200 but even then I get C stack limit usage errors in R -> error initializing RPy. Only ulimit -s unlimited seems to work for my setup. To clarify, I have had this problem with R-2.4.1 -> R-2.7, so I am inclined to think it is not 2.7-specific. The old

Re: [Rpy] segmentation fault after long batch of LM

Someone else reported on this list a similar sounding problem not so long ago. The problem might be caused by manipulating a stale pointer to an R object (that is an object that was discarded during R's garbage collection), and troubleshooting this will likely mean running things through a C debu

Re: [Rpy] rpy memory issues?

I think I am seeing pretty much exactly the same issue, as I reported in another post. In my case I am doing the looping in python, creating a dataframe from a python dictionary with r.as_data_frame, calling r.lm and extracting the results from r.summary. The only work-around i have sofar is to spa

[Rpy] segmentation fault after long batch of LM

I am using rpy/R to perform linear regressions on a large number of datasets, in one python run, and am encountering segmentation faults after a large number of iteration, while handling cases which, taken on their own run without a problem. My intuition is that the previous iterations somehow corr

Re: [Rpy] rpy and mod_python problem

Thanks for posting it. I am not a C stack expert, but I suspect that there is a reason why it is not unlimited by default. I would particularly consider putting somehow a limit to it on a webserver, although that limit would naturally be larger than the default one. It would be nice come up with s

[Rpy] SF.net SVN: rpy: [578] branches/rpy_nextgen

Revision: 578 http://rpy.svn.sourceforge.net/rpy/?rev=578&view=rev Author: lgautier Date: 2008-07-14 08:21:49 -0700 (Mon, 14 Jul 2008) Log Message: --- rlike: - new package - in which there is a module 'container' - in which there is a class 'NamedList' doc: - mi