RE: OMIT-map

2024-08-19 Thread Többens , Daniel
This seems to be another name for a difference Fourier map, calculated from F_obs - F_calc; the term omit map being used in the macromolecular community. It shows scattering density missing in the model, i.e. from omitted atoms. *Von:* davide.lev...@gmail.com *Gesendet:* Sonntag, 18. August

Re: OMIT-map

2024-08-19 Thread Jonathan Wright
It should be slightly different (https://doi.org/10.1107/S0021889887012755), see slide 9 here: https://brockhouse.lightsource.ca/media/uploads/xrd-school-2024/introduction_to_gsas-ii.pdf The calculation appears to be here: https://github.com/AdvancedPhotonSource/GSAS-II/blob/0b735da79488087ee5bc

Re: OMIT-map

2024-08-19 Thread Marcin Wojdyr
The OMIT map is calculated like a normal map, but with a certain region of the structure being omitted when calculating Fcalc. A usual electron density map in macromolecular crystallography is calculated from both experimental (Fobs) and calculated (Fcalc) structure factors. Fcalc (structure facto