Re: [R-SIG-Mac] as.Date() does not work with format %B

2012-06-09 Thread peter dalgaard
which was fixed in May 2010, but apparently hasn't percolated down to the OSX updates yet. (Still there in local build on Lion, so not just CRAN binaries. Insert appropriate rant about Open Source and commercial vendors here...) Summary of bug: strptime with %B goes through the months and check

Re: [R-SIG-Mac] suppressPackageStartupMessages() does not work on the command line version R (but works on the GUI version)

2012-06-11 Thread peter dalgaard
ES-0350613) > ## Not to put too fine a point on it: > suppressPackageStartupMessages(library(MCMCpack)) > -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (

Re: [R-SIG-Mac] suppressPackageStartupMessages() does not work on the command line version R (but works on the GUI version)

2012-06-11 Thread peter dalgaard
On Jun 11, 2012, at 13:04 , peter dalgaard wrote: > > On Jun 11, 2012, at 12:21 , Peng Yu wrote: > >> Hi, >> >> suppressPackageStartupMessages works in the GUI version of R on my >> Mac. But it does not work in the command line version of R. Could >> any

Re: [R-SIG-Mac] suppressPackageStartupMessages() does not work on the command line version R (but works on the GUI version)

2012-06-11 Thread peter dalgaard
64-bit) Ditto here with stock 2.15.0 and R-devel... -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd@cbs.dk Priv: pda...@gmail.com ___ R-SIG-Ma

Re: [R-SIG-Mac] Importing Excel files

2012-06-18 Thread peter dalgaard
R version, though.) > Sincerely, > Victoria Xiao > > [[alternative HTML version deleted]] > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter

Re: [R-SIG-Mac] Importing Excel files

2012-06-19 Thread peter dalgaard
on a Mac? Thanks >>>>>> so >>>>>> much. >>>>>> >>>>>> Sincerely, >>>>>> Victoria Xiao >>>>>> >>>>>> [[alternative HTML version deleted]] >>>&g

Re: [R-SIG-Mac] packages, R-patched and RC [Was: Importing Excel files]

2012-06-20 Thread peter dalgaard
On Jun 19, 2012, at 23:29 , Prof Brian Ripley wrote: > On 19/06/2012 17:35, Simon Urbanek wrote: >> On Jun 19, 2012, at 5:36 AM, peter dalgaard wrote: >> >>> >>> On Jun 19, 2012, at 01:16 , Colstat wrote: >>> >>>> I think the error s

Re: [R-SIG-Mac] problem with lack of BWidget in TCL/TK 8.6

2012-07-03 Thread peter dalgaard
unpack the tar file into /usr/local/lib: cd /usr/local/lib sudo tar xvf ~pd/Downloads/bwidget-1.9.5.tar (replacing ~pd if you're not me, of course) Done. Verify by starting R and > library(tcltk) Loading Tcl/Tk interface ... done > tclRequire("BWidget") 1.9.5 -- Peter

Re: [R-SIG-Mac] Segfault with rWishart in R 2.15.1

2012-07-04 Thread peter dalgaard
se the trouble returns at twice the matrix size. Notice that there are really two issues here. One is that the R_CheckStack() safeguards are failing. The other is why we're using stack allocation in the first place. -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Busin

Re: [R-SIG-Mac] rgl broken with 2.15.1?

2012-07-12 Thread peter dalgaard
ing file osx/osxgui.o, file was built for i386 which is not > the architecture being linked (x86_64) > mv x11*.o AGL > mv Temp/* . > rm -rf Temp > installing to > /Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl/libs/x86_64 > ** R > ** demo

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-17 Thread peter dalgaard
erring... It really is the library that goes AWOL. I'm not sure why, but the magical incantation on OSX (Snow Leopard at least) seems to be install.packages("rgl", configure.args="--with-gl-libs=/usr/X11/lib") -- Peter Dalgaard, Professor, Center for Statistics, Copen

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-17 Thread peter dalgaard
On Jul 17, 2012, at 12:35 , peter dalgaard wrote: > > On Jul 17, 2012, at 03:02 , Duncan Murdoch wrote: > >> It also needs the headers, not just the library. If you have them and it's >> not finding them, you can give hints to the configure script; after &g

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-17 Thread peter dalgaard
-O object i386 > > Davor Yay, nice catch! This allows me to build an rgl that loads in R.app: tar xvfz rgl_0.92.880.tar.gz rm `find rgl -name \*.o` R64 CMD INSTALL --configure-args=--with-gl-libs=/usr/X11/lib rgl I still have some issues with the 32 bit version, but I believe those are u

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-23 Thread peter dalgaard
permute_0.7-0 >> RUnit_0.4.26 bio3d_1.1-3 >> [12] RCytoscape_1.6.5 XMLRPC_0.2-4 graph_1.34.0 >> org.Hs.eg.db_2.7.1 RSQLite_0.11.1 DBI_0.2-5 >> AnnotationDbi_1.18.1 Biobase_2.16.0 BiocGenerics_0.2.0 >> adegenet_1.3

Re: [R-SIG-Mac] rgl configure error: "missing required library GL"

2012-07-24 Thread peter dalgaard
On Jul 23, 2012, at 20:49 , Duncan Murdoch wrote: > On 23/07/2012 2:31 PM, peter dalgaard wrote: >> On Jul 23, 2012, at 19:13 , Duncan Murdoch wrote: >> >> > On 23/07/2012 12:55 PM, Grimes Mark wrote: >> >> I wonder if this is related. Package 'rgl

Re: [R-SIG-Mac] error executing code from ISwR

2012-08-11 Thread Peter Dalgaard
mands on page 52 > cause R to hang and never come back. > > dd <- data.frame() > fix(dd) > > My computer: Mac > Operating system: Lion (10.7.4) > R version: 2.13.1 > > I like your book very much and plan to read all chapters. > > Thanks, > Naresh &g

Re: [R-SIG-Mac] R and Valgrind hangs on Snow Leopard

2012-08-13 Thread peter dalgaard
for an HTML browser interface to help. Type 'q()' to quit R. > print(seq(10)) [1] 1 2 3 4 5 6 7 8 9 10 > --8228:0:gdbsrv readchar: poll got -1 ==8228== ==8228== HEAP SUMMARY: ==8228== in use at exit: 29,164,319 bytes in 14,301 blocks ==8228== total heap usage: 30

Re: [R-SIG-Mac] install.packages on '.tar.gz' fails

2012-08-15 Thread peter dalgaard
pe="source" in install.packages. > Thanks, > > Mike > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor, Center for Statistics, Copenhag

Re: [R-SIG-Mac] R console

2012-08-24 Thread peter dalgaard
cons, one of which, "Startup", is listed in the first group, labeled General. However, clicking Startup doesn't crash and doesn't seem to do anything related to X11. -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Fred

Re: [R-SIG-Mac] building R under Lion

2012-08-28 Thread peter dalgaard
modules >> make[1]: *** [R] Error 1 >> make: *** [R] Error 1 >> >> So it seems that it does not like -framework vecLib. I tried with >> -framework Accelerate, but I get the same error. >> >> My guess is that there is some new thing I have to do here

Re: [R-SIG-Mac] New message from OS (Mountain Lion) with system command

2012-09-02 Thread peter dalgaard
" Company) > Phone: 1-866-PLessThan (1-866-753-7784) > Fax: 1-866-PLessThan (1-866-753-7784) > www.PLessThan.com > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://

Re: [R-SIG-Mac] Opening R on leopard

2012-09-11 Thread peter dalgaard
> R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd@cbs.dk Priv: pda.

Re: [R-SIG-Mac] [R] tcltk installation problem in R (Mac OS X version)

2012-09-13 Thread peter dalgaard
or from tclRequire. The issue is that the Tcl/Tk install doesn't include the _Tcl_ package 'BWidget'. How to install it on OSX was described in a post on R-sig-mac on July 4 2012. (Retaining r-help in cc: since missing Tcl packages could happen on all platfo

Re: [R-SIG-Mac] Naive question about permissions

2012-10-19 Thread peter dalgaard
SIG-Mac] Naive question about permissions > > On 12-10-19 02:28 PM, Paul Hewson wrote: >> As I say, I think I've tracked the symlink itself as well as the >> files it links to /usr/bin/R is itself a symlink to R64.All three >> users have an x when you do ls -l , they don't

Re: [R-SIG-Mac] tcltk does not automatically launch XQuartz

2012-10-25 Thread peter dalgaard
; Tel. +39-075-5855233 > Fax: +39-075-5855950 > E-mail: l...@stat.unipg.it > Web page: http://www.stat.unipg.it/luca > -- > > > > > > > > _______ > R-SIG-Mac mailing list > R-SIG-M

Re: [R-SIG-Mac] R script in batch mode on Mac

2012-11-07 Thread peter dalgaard
e the content of the file $i into the command, which makes no sense when the command is "echo" or "R". Also check up on the use of single and double quotes. > > Didier > [[alternative HTML version deleted]] > > _

Re: [R-SIG-Mac] pb with the quartz graphics in Mac OS 10.6.8

2012-11-27 Thread peter dalgaard
that its second argument does not do what I think you think it does. Increasing the value of n= might be more fruitful. -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd@cbs.dk Priv: pd

Re: [R-SIG-Mac] up/down arrow history

2012-11-29 Thread peter dalgaard
keys work fine for me in R.app, R within a Terminal, and in the Terminal app itself. In an emacs buffer, I need M-p etc., but that's the same way on Linux. -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denm

Re: [R-SIG-Mac] R 2.15.2, OS X 10.8.2, JGR

2012-12-28 Thread peter dalgaard
with ipot. I tried reinstalling rjava and got the > following: I can't remember this kind of stuff form one occasion to the next either, but wouldn't it be something with "sudo R CMD javareconf" ? -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School So

Re: [R-SIG-Mac] *** caught segfault *** cause 'memory not mapped'

2013-02-17 Thread peter dalgaard
y argued that this > involves the segmentation of the memory, but I know nothing about this > technical informatics topics. I don't know how to do. I tried to search > some online solutions through forums, but I didn't find any help other than > "check your software i

Re: [R-SIG-Mac] *** caught segfault *** cause 'memory not mapped'

2013-02-18 Thread peter dalgaard
'. I specify that > some days ago I uninstalled the package Rcmdr and try to reinstall it, > downloading it from a different CRAN mirror; but nothing has changed. > > On Sun, Feb 17, 2013 at 4:21 PM, peter dalgaard wrote: > Looks like an internal bug, but I can't reproduce

Re: [R-SIG-Mac] using vecLib BLAS in 3.0

2013-05-22 Thread peter dalgaard
Does it work to ln -s /System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/libBLAS.dylib libRblas.dylib -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 E

Re: [R-SIG-Mac] Same code, working with R.app Mac GUI 1.61 (R 3.0.1), not with R 3.0.1 from terminal

2013-05-29 Thread peter dalgaard
> R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg,

Re: [R-SIG-Mac] hidden files and directories

2013-08-06 Thread peter dalgaard
re trying their damndest to hide it, though. It's only settable by "defaults write ..." in a Terminal. (And if you know how to do that, you might as well be using "ls".) -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2

Re: [R-SIG-Mac] hidden files and directories

2013-08-06 Thread peter dalgaard
. The key is to do what Kasper said. Exactly what he said, not what you think he meant to say! I.e., R CMD build pkgName R CMD check pkgName_X_Y_Z.tar.gz I.e., do not install, build and run check on the .tar.gz file. R CMD build should take care of skipping the .DS_store files. > >

Re: [R-SIG-Mac] Problems loading Rcmdr on a Mac 10.7.2 and a Mac 10.6.8

2013-09-20 Thread peter dalgaard
pplication). I know Simon distrusts them, but sometimes I do feel that we should work more closely with the people doing managed distributions for OSX, i.e. MacPorts, Homebrew, Fink. (Not sure how they'd cope with missing OS updates, though.) -- Peter Dalgaard, Professor Center for Stati

Re: [R-SIG-Mac] R-console 3.0.2 & R-studio 0.97.551 problem with mac OS X 10.8.3

2013-09-29 Thread peter dalgaard
orts, then we'd probably need to know the exact variant and compiler setup -- last one I tried wouldn't even compile (because it tried to use gcc-4.8). If it is another port, we'd need to know more about the setup. A CJK-locale issue might be suspected from the Chinese characters

Re: [R-SIG-Mac] What's up with R.research.att.com?

2013-10-08 Thread peter dalgaard
t; https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd@cbs.dk Priv: pda...@gmail.com ___ R-

Re: [R-SIG-Mac] Compiling against the Accelerate framework on OS X 10.9

2013-10-28 Thread peter dalgaard
intained distributions onto commercial platforms, it seems that amateurism kicks in.) -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd@cbs.dk Priv: pda...@gmail.com __

Re: [R-SIG-Mac] Updating to Mavericks

2013-10-31 Thread peter dalgaard
+44 1865 272866 (PA) > Oxford OX1 3TG, UK Fax: +44 1865 272595 > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor Center for Statist

Re: [R-SIG-Mac] Updating to Mavericks

2013-11-01 Thread peter dalgaard
On 31 Oct 2013, at 23:19 , Prof Brian Ripley wrote: > On 31/10/2013 14:57, peter dalgaard wrote: >> Thanks Brian. >> >> One more item: If building from SVN, you may need to run "svn upgrade" in >> the source directory (at top level). >> >>

Re: [R-SIG-Mac] R crashes on preferences screen

2013-11-08 Thread peter dalgaard
essor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ >>>> University of Oxford, Tel: +44 1865 272861 (self) >>>> 1 South Parks Road, +44 1865 272866 (PA) >>>> Oxford OX1 3TG, UKFax: +44 1865 27

Re: [R-SIG-Mac] Warning Messages After Installing Mc OS X version

2013-11-13 Thread peter dalgaard
__ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd@cbs.dk Priv: pda...@gmail.com

Re: [R-SIG-Mac] Installing spatstat 1.34-1

2013-11-14 Thread peter dalgaard
the .tgz file for you? > > Thanks in advance for suggestions or explanations! > > [[alternative HTML version deleted]] > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org &

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-20 Thread peter dalgaard
the R Markdown tab > (via the Rcmdr Tools -> Options menu, Output tab -- uncheck the box for R > Markdown) and see whether the problem disappears. > Negative. I see the issue even with an older Rcmdr version without the Markdown stuff. > Please let me know what happens. --

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-20 Thread peter dalgaard
ave any incite? Have you heard of anyone else >> encountering this problem? >>>>>>>>> >>>>>>>>> Jonathan M. Chapman, DVM >>>>>>>>> 312-813-1166 >>>>>>>>> petsr...@icloud.com >>

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-22 Thread peter dalgaard
- it has nothing to do with XQuartz versions > > > [[alternative HTML version deleted]] > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor, Center f

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-28 Thread peter dalgaard
;t switch >>> off >>>> App Nap, as is possible with several other apps (go to the Info >> panel >>>> of an app and it should show a 'Prevent App Nap' box, e.g. Dropbox). >>>> R.app did not show tha

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-28 Thread peter dalgaard
On 28 Nov 2013, at 14:38 , John Fox wrote: > Dear Peter, > > On Thu, 28 Nov 2013 12:00:31 +0100 > peter dalgaard wrote: >> >> On 28 Nov 2013, at 01:46 , John Fox wrote: >> >>> Hi Rob, >>> >>> I had some time today and so I sta

Re: [R-SIG-Mac] Problem compiling packages

2013-11-28 Thread peter dalgaard
/Subversion/sedar/pkg/spacemakeR_0.0-5.tgz', >> à cause de 'No such file or directory' >> packaged installation of ‘spacemakeR’ as ‘spacemakeR_0.0-5.tgz’ >> * DONE (spacemakeR) >> >> >> Note that I have carefull

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-30 Thread peter dalgaard
e to go for a cup of coffee in the meantime). Of course it is nicer, OS-wise, to leave App Nap enabled, but it reduces the energy footprint of an inactive R.app from only about 1.5 to nearly 0.0, compared to about 100 when R is actually working. -- Peter Dalgaard, Professor, Center for Stat

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-30 Thread peter dalgaard
it is the bottom right corner that is obscured, so that the spinning "I'm working" symbol is visible, so I suppose the logic is tied to window updates. > > On 30/11/2013 10:59, peter dalgaard wrote: >> >> On 29 Nov 2013, at 16:35 , Simon Urbanek wrote: &

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

2013-11-30 Thread peter dalgaard
ult? > > Regards, > Rob J. Goedman > goed...@icloud.com > > > On Nov 30, 2013, at 7:00 AM, peter dalgaard wrote: > >> >> On 30 Nov 2013, at 12:37 , Prof Brian Ripley wrote: >> >>> This does not happen for me provided R.app is visible. Fr

Re: [R-SIG-Mac] Inaccurate inaccuracies on Mac only?

2013-12-02 Thread peter dalgaard
nal programmer had believed that an algorithm would converge to exact FP equality, but the optimizer had made it not always so, resulting in an infinite loop.) -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 20

Re: [R-SIG-Mac] R 3.0.2/3.0.3 source install problems on OS X 10.9.2

2014-03-09 Thread peter dalgaard
tall_packages), I suppose, but it is a bit beyond me currently). But first, I'd check what Makeconf sets the TAR variable to. -pd > > [[alternative HTML version deleted]] > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://st

Re: [R-SIG-Mac] R 3.0.2/3.0.3 source install problems on OS X 10.9.2

2014-03-10 Thread peter dalgaard
>>> Thank you for your reply, Peter. >>> >>> On Sun, Mar 9, 2014 at 3:31 AM, peter dalgaard wrote: >>>> >>>> On 09 Mar 2014, at 00:21 , Bryan Renne wrote: >>>> >>>>> Hi there. I am having compilation problems w

Re: [R-SIG-Mac] Dramatically slow map plotting

2014-03-21 Thread peter dalgaard
layout = list(arrow, scale, text1, text2), as.table = TRUE) >> proc.time() - ptm >> >> user system elapsed >> 2.408 0.064 2.616 >> >> It was quick. >> >> Then I did a single plot with my shape: >> >> mapa <- readShapePoly(“Enti

Re: [R-SIG-Mac] upgrade to Mavericks

2014-03-28 Thread peter dalgaard
er for more than a month. (Before that, it was in 10.9.2 beta with a release right around the corner, but then there was the emergency security fix.) -- Peter Dalgaard, Professor Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+

Re: [R-SIG-Mac] ESS on Mavericks

2014-04-07 Thread peter dalgaard
t; > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 200

Re: [R-SIG-Mac] Unexpected behavior of R round function on Mac

2014-04-11 Thread peter dalgaard
ases. > > Is this a bug or somehow expected behavior? It seems to be related to the > mac hardware. I can ad hoc fix it using floor, but that is hardly optimal. > > Thanks, > Per > > [[alternative HTML version deleted]] > > ___ > R-SIG-Mac mailing list > R-SI

Re: [R-SIG-Mac] [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread peter dalgaard
e". As people use Sweave only sporadically, it could take years before the old usage got stamped out. And anyways, the command format is the obvious way to generate documents in scripts and makefiles, isn't it? -pd -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Bus

Re: [R-SIG-Mac] Math bug in Mavericks build

2014-04-23 Thread peter dalgaard
US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > Thanks, > Dan > > _______ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalg

Re: [R-SIG-Mac] Best installation approach of R on Mavericks for Emacs/Homebrew users?

2014-05-22 Thread peter dalgaard
Wisdom begins in wonder.” --Socrates >> ((λ (x) (x x)) (λ (x) (x x))) >> “Life has become immeasurably better since I have been forced to stop >> taking it seriously.” --Thompson >> >> [[alternative HTML version deleted]] >> >>

Re: [R-SIG-Mac] Best installation approach of R on Mavericks for Emacs/Homebrew users?

2014-05-22 Thread peter dalgaard
On 22 May 2014, at 10:53 , Rainer M Krug wrote: > peter dalgaard writes: > >> On 22 May 2014, at 00:32 , Vincent Goulet wrote: >> >>> Ok, I'm biased here, but for me (and my students!) the simple procedure is: >>> >>> 1. Install th

Re: [R-SIG-Mac] HELP: R for Mac OS 10.9 Mavericks Malfunction

2014-07-03 Thread peter dalgaard
*> * > > How can i fix this..?? Need your help ASAP.. > > Kind regards.. > > > > *Senyo Norgbey, MD**MS Candidate '14* > > *Johns Hopkins University School of Medicine, * > *Division of Health Sciences Informatics,* > > *2024 East Monument Stree

Re: [R-SIG-Mac] Package Manager does not work with the new R version

2014-07-08 Thread peter dalgaard
ny package from the > library. Is it a bug, how can I fix it? > > I'll apprecciate any help! > > Silvia > > [[alternative HTML version deleted]] > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listi

Re: [R-SIG-Mac] bypassing the R.app help browser?

2014-08-13 Thread peter dalgaard
>>>>> Subject: Re: [R-SIG-Mac] bypassing the R.app help browser? >>>>>> >>>>>> On Aug 12, 2014, at 2:33 PM, John Fox wrote: >>>>>> >>>>>>> Dear list members, >>>>>>> >>>>>>>

Re: [R-SIG-Mac] Bug in R.app code editor

2014-08-30 Thread peter dalgaard
I see it, but as a hang, not a crash. -pd On 30 Aug 2014, at 21:38 , Brandon Hurr wrote: > Duncan > > I could not replicate on my air, but I'm running Yosemite beta 2 and > copied from Chrome 38.0.2125.24 beta (64-bit). -- Peter Dalgaard, Professor, Center for Stati

Re: [R-SIG-Mac] Clipboard problems

2014-09-03 Thread peter dalgaard
uot;,intern=TRUE))) [1] "line 1" "line 2" "line 3" -pd > Duncan Murdoch > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard,

Re: [R-SIG-Mac] Failure of CLI with .Rprofile on Mac OS X

2014-09-20 Thread peter dalgaard
g illumination after poking around in your setup, I suspect you may > need to post the output of ALL of sessionInfo() AND the results of > dput(Sys.getenv()) . > > -- > David. > >> >> Thanks, >> Gang >> [[alternative HTML

Re: [R-SIG-Mac] Failure of CLI with .Rprofile on Mac OS X

2014-09-21 Thread peter dalgaard
, but that doesn't actually do anything, except for things that use the PWD variable directly, like the shell prompt Peter-Dalgaards-MacBook-Air:BUILD pd$ export PWD=/foo/bar Peter-Dalgaards-MacBook-Air:bar pd$ pwd /Users/pd/r-devel/BUILD -- Peter Dalgaard, Professor, Center for Stat

Re: [R-SIG-Mac] Failure of CLI with .Rprofile on Mac OS X

2014-09-21 Thread peter dalgaard
("HOME"),".Rprofile", sep="/")) -pd On 21 Sep 2014, at 11:02 , Prof Brian Ripley wrote: > On 21/09/2014 00:25, David Winsemius wrote: >> >> On Sep 20, 2014, at 2:15 PM, peter dalgaard wrote: >> >>> Notice that we have a similar

Re: [R-SIG-Mac] Yosemite and R

2014-10-18 Thread peter dalgaard
t; > Regards, > > Marc Schwartz > Same here, I notice though that Java and Xquartz need reinstalls. -pd -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd@cbs.dk Priv: pd

Re: [R-SIG-Mac] Yosemite and R

2014-10-18 Thread peter dalgaard
> On 18 Oct 2014, at 17:23 , Prof Brian Ripley wrote: > > On 18/10/2014 15:01, Marc Schwartz wrote: >> >>> On Oct 18, 2014, at 7:53 AM, peter dalgaard wrote: >>> >>> >>>> On 17 Oct 2014, at 22:49 , Marc Schwartz wrote: >>>

Re: [R-SIG-Mac] Yosemite and R

2014-10-20 Thread peter dalgaard
cent OS X builds). >> >> Cheers, >> Simon >> > > I've been having issues getting the 'tcltk' package to run. I had this with > Mavericks at first as well, but once X11 got updated the issue went away. > But alas for now X11 is up to date and

Re: [R-SIG-Mac] Yosemite and R

2014-10-21 Thread peter dalgaard
LDFLAGS=-L/usr/X11R6/lib r_arch=x86_64 with_blas='-framework Accelerate' with_lapack=yes (which is likely showing my incompetence) However, this is clearly sufficient to explain why the tkdensity demo crashed for me; presumably nothing to do witk tcltk per se. -- Peter Dalgaard, Prof

Re: [R-SIG-Mac] sh: convert: command not found

2014-10-24 Thread peter dalgaard
mited experimentation, I found that you can pass the PATH explicitly as in path <- Sys.getenv("PATH") cmd <- paste("PATH=", path, "; which pdflatex") system(cmd) I don't recall needing to export PATH, and there could be complicatio

Re: [R-SIG-Mac] sh: convert: command not found

2014-10-24 Thread peter dalgaard
d me slightly is that standard unix logic is that FOO=bar baz sets FOO in the environment of baz, and it was not obvious to me that setting PATH= affects the _shell_ while it is looking for baz. (This might be documented somewhere in POSIX?). -pd -- Peter Dalgaard, Professor, Center f

Re: [R-SIG-Mac] "command not found" from system() call in GUI with proper PATH

2014-10-24 Thread peter dalgaard
_ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >> >> >> -- >> >>

Re: [R-SIG-Mac] About R

2014-10-28 Thread peter dalgaard
? Appreciate > your reply. > > >Sam Wang > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Peter Dalgaard, Professor, Center for St

Re: [R-SIG-Mac] Command Line Quartz Device in Yosemite

2014-10-31 Thread peter dalgaard
e current code under >> Yosemite, perhaps evaluation of my patch could be given a higher priority? >> If it would help I can provide updated files which are drop-in replacements >> for the current R trunk. >> >> Cheers, >> >> Colin > > _

Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 141, Issue 6

2014-11-13 Thread peter dalgaard
e we have another entry for the R-fortunes file! > > :-) > It is the sort of thing that carries a certain risk of backfiring, though. ("It just works". Cue Yosemite and "Peter's MacBook Air (27)"...) -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Busine

Re: [R-SIG-Mac] R Mac Error on edit() Window Close

2014-11-14 Thread peter dalgaard
ion instructions ("edit(airquality)" didn't do it for me) (b) Are you seeing this both with Snow Leopard and Mavericks builds? -pd -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email

Re: [R-SIG-Mac] R Freezes while Document editing

2014-12-04 Thread peter dalgaard
gt; locale: > [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > _______ > R-SIG-Mac mailing list > R-SIG-Mac@r-pr

Re: [R-SIG-Mac] Is Yosemite now "safe" for most of us?

2014-12-25 Thread peter dalgaard
d]] >>> >>> ___ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >> >> > > > -- > Brian D. Ripley, rip...@stats.ox.

Re: [R-SIG-Mac] “pdflatex is not available” from “R CMD check”

2015-02-23 Thread peter dalgaard
8/C/en_US.UTF-8/en_US.UTF-8 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods >> [7] base >> >> loaded via a namespace (and not attached): >> [1] tools_3.1.2 >>> >> [[alternative HTM

Re: [R-SIG-Mac] Problems with function fix()

2015-02-23 Thread peter dalgaard
t; Emanuele > I believe "the guy" also suggested that you should provide a reproducible example and version information (of R, Rgui, and OS X). -pd -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark

Re: [R-SIG-Mac] R Versioning and Packages

2015-04-17 Thread peter dalgaard
ssions on /library to exclude group write permission by "admin" in the first place (but frankly, I have forgotten whether one does anything related to this during standard installation.) > Duncan Murdoch > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.o

Re: [R-SIG-Mac] Cannot list Bioconductor packages

2015-04-23 Thread peter dalgaard
> > > -- > Federico Calboli > Ecological Genetics Research Unit > Department of Biosciences > PO Box 65 (Biocenter 3, Viikinkaari 1) > FIN-00014 University of Helsinki > Finland > > federico.calb...@helsinki.fi > > ___ > R-SIG-Mac mailing list >

Re: [R-SIG-Mac] How to get a Fortran compiler compatible to Xcode?

2015-05-10 Thread peter dalgaard
ith the newer sources, you need to install some stuff from http://r.research.att.com/libs/ : pcre, xz, texinfo, plus maybe some more that I have forgotten. > Thanks & cheers, > Marius > > ___ > R-SIG-Mac mailing list &

Re: [R-SIG-Mac] How to get a Fortran compiler compatible to Xcode?

2015-05-10 Thread peter dalgaard
> PS: Also thanks for the hint towards r.research... I'll look into that > once everything else is running. I already have some things running, > e.g., texinfo, not sure if the 'texinfo' you mentioned is a specific > one (but I'll see then). > > > >

Re: [R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread peter dalgaard
to R Under development (unstable) (2015-03-17 r67996) -- "Unsuffered Consequences" and it is even in the CRAN version (Mavericks build, I think - x86_64-apple-darwin13.1.0 (64-bit)) R version 3.1.1 (2014-07-10) -- "Sock it to Me" > ___

Re: [R-SIG-Mac] R 3.2.0 Mavericks/Yosemite: help.search showing error

2015-06-14 Thread peter dalgaard
Notice that 3.2.0 Patched disappears when 3.2.1 prereleases start. There seems to be no backlog of builds of 3.2.0 Patched, but there would be little point in looking for one. 3.2.1 is really just a formal release of patches-to-date. -- Peter Dalgaard, Professor, Center for Statistics, Copen

Re: [R-SIG-Mac] R 3.2.0 Mavericks/Yosemite: help.search showing error

2015-06-14 Thread peter dalgaard
hink what happens is that > the currently installed version is then reported which is whatever did > succeed last - in this case 3.2.1 RC. The bug here is that nothing (other > that the error) should have been reported. > > Cheers, > Simon > > > On Jun 14, 2015, at 3

Re: [R-SIG-Mac] R 3.2.0 Mavericks/Yosemite: help.search showing error

2015-06-15 Thread peter dalgaard
On 15 Jun 2015, at 08:40 , David Winsemius wrote: > > On Jun 14, 2015, at 11:11 PM, peter dalgaard wrote: > >> OK, that explains it. >> >> (However, `cat VERSION` should work whether or not the build succeeds). >> > > In the confusion about which b

Re: [R-SIG-Mac] R 3.2.0 Mavericks/Yosemite: help.search showing error

2015-06-15 Thread peter dalgaard
ications out of sync with R itself, but that is not what we do.) -pd -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

Re: [R-SIG-Mac] Problems to install a package

2015-07-31 Thread peter dalgaard
>>>>> >>>>>>> I suspect that you have not obtained Xcode and installed Command line >>>>>> tools and perhaps not installed XQuartz (although that is not the cause >>>>>> of >>>>>> any error that I see here.) &

Re: [R-SIG-Mac] Problems to install a package

2015-07-31 Thread peter dalgaard
> On 31 Jul 2015, at 21:36 , Berend Hasselman wrote: > >> >> On 31-07-2015, at 20:46, peter dalgaard wrote: >> >>> >>> On 31 Jul 2015, at 12:33 , Timothy Bates wrote: >>> >>> This happened for me too: that Intel Core 2 is

Re: [R-SIG-Mac] Problems to install a package

2015-07-31 Thread peter dalgaard
> On 31 Jul 2015, at 22:26 , Marc Schwartz wrote: > >> >> On Jul 31, 2015, at 3:14 PM, peter dalgaard wrote: >> >> ... >> It's 4.2.1 and 4.2.3, it seems. That's for the local builds; for the CRAN >> binaries, it seems that I just never

Re: [R-SIG-Mac] Problems to install a package

2015-08-01 Thread peter dalgaard
> On 01 Aug 2015, at 07:34 , Berend Hasselman wrote: > >> >> On 31-07-2015, at 22:14, peter dalgaard wrote: >> >>> >>> On 31 Jul 2015, at 21:36 , Berend Hasselman wrote: >>> >>>> >>>> On 31-07-2015, at 20:46, p

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