[R-SIG-Mac] Java on Mac OS X 10.6.5 (Snow Leopard)

2010-11-30 Thread Simon Urbanek
Apparently the latest update to Snow Leopard (10.6.5) removes necessary header files from the system Java installation. They are now only available in the corresponding Xcode SDKs. What does that mean? * If you are using binaries from CRAN, there is nothing to worry about and you can ignore th

Re: [R-SIG-Mac] html help and browser vs. Rgui

2010-12-09 Thread Simon Urbanek
Carl, On Dec 9, 2010, at 5:53 PM, Carl Witthoft wrote: > I have two separate questions about help windows. > > First: I'm running R2.12 at home under 10.5.8, and at work under 10.6.4 > (Intel iMacs in both cases). > > At home, when I invoke help, e.g., > > ?sin , > I get the help page in the

Re: [R-SIG-Mac] R on iphone with issh

2010-12-18 Thread Simon Urbanek
On Dec 17, 2010, at 6:50 PM, Roger Koenker wrote: > There seems to have been quite a lot of gnashing of teeth > about running R on the iphone, but having recently installed > issh on my iphone4 and found it capable of running R remotely -- complete > with forwarded x11 graphics, I've been wonderi

Re: [R-SIG-Mac] Unable to use jpeg() in R.2.12.1

2010-12-20 Thread Simon Urbanek
On Dec 20, 2010, at 3:20 PM, Li, Man wrote: > Dear list, > > I just installed R-2.12.1 this afternoon on my mac (OS X 10.5.8). When I was > trying to open jpeg() in R, I got this error message below. > >> jpeg() > Error in jpeg() : X11 module cannot be loaded > In addition: Warning message: >

Re: [R-SIG-Mac] Unable to use jpeg() in R.2.12.1

2010-12-20 Thread Simon Urbanek
quick response. > > I checked all upgrades from Apple. Nothing comes up. Here is my X11 version > info. > > TransformProcessType: Success > X11.app starting: > X.org Release 7.2 > X.Org Xquartz X Server 1.3.0-apple5 > Build Date: 20080305 > > Mandy > > On 12/20

Re: [R-SIG-Mac] Xcode 3.2.5 and gfortran

2010-12-21 Thread Simon Urbanek
On Dec 21, 2010, at 1:31 PM, Berend Hasselman wrote: > > I currently use Xcode 3.2.2 and gfortran-42-5659.pkg (obtained from the > http://r.research.att.com/tools/ page) on Snow Leopard 10.6.5. > > I would like to know if I can use the gfortran from gfortran-42-5664.pkg > (integrated with Xc

Re: [R-SIG-Mac] Poor Performance of R for Mac as distributed on the developer's page

2011-01-10 Thread Simon Urbanek
On Jan 10, 2011, at 12:25 PM, Yan Zhou wrote: > Dear all, > > I have been using the stable branch (i.e. 2.12-branch patched for now) > downloaded from http://r.urbanek.info/ for quite a long time. The binary is > compiled on Mac OS X 10.5 as said on the webpage. Just for curiousness I > trie

Re: [R-SIG-Mac] odd problem building gmp from source

2011-01-11 Thread Simon Urbanek
On Jan 11, 2011, at 6:06 PM, Carl Witthoft wrote: > Hi, > I chose to make a minor edit to the R-source matrixz.R in the gmp package > (not to be confused with the GNU gmp library which it calls). > > On my Intel iMac at work, running OSX 10.6.4, it compiled just fine. > > for reference, that

Re: [R-SIG-Mac] plot() does not give labels under quartz

2011-01-21 Thread Simon Urbanek
On Jan 21, 2011, at 1:27 AM, Tena Sakai wrote: > Hi Jari, > >> it will probably also bug you elsewhere than in R graphics. > > Yes, an excellent point. I might as well fix it for good. > I gave a quick look at FontBook.app, but I didn't get intuitive > feel as to how to fix my problem. Chec

Re: [R-SIG-Mac] unrecognized command line option "-arch"

2011-01-27 Thread Simon Urbanek
On Jan 20, 2011, at 3:44 PM, Matt Pocernich wrote: > Hello, > > Up until 30 minutes ago, I have been able to install the following package. > Perhaps while playing with the install.package( ) command and trying to > install a built package - I did something. > > I am running 2.12 on an iMac

Re: [R-SIG-Mac] Reading a MySQL table into R

2011-01-31 Thread Simon Urbanek
On Jan 31, 2011, at 2:14 PM, Marc Schwartz wrote: > On Jan 31, 2011, at 12:56 PM, Luca Meyer wrote: > >> Hello, >> >> I should first mention that I am not familiar with database management >> tools, nor with database solutions for Mac OS X. >> >> I currently have some data sitting on a MySQL

Re: [R-SIG-Mac] R-engine failure on Mac OS Snow Leopard 10.6.4, 32 bits, with java 1.6

2011-02-01 Thread Simon Urbanek
On Feb 1, 2011, at 10:01 AM, Christine Plumejeaud wrote: > Hi, > I have developped a java swing application (1.6) embedding R (using the > JRI, JRengine) and all was fine on my previous laptop (Mac OS X Leopard, > 10.5). > > But I had to change my laptop (Snow Leopard 10.6.4, 32 bits with java

Re: [R-SIG-Mac] open help in browser

2011-02-03 Thread Simon Urbanek
On Feb 3, 2011, at 3:31 PM, DONG Keren wrote: > Hello, > > Is there a way to open help files in the default web browser instead of a > new R-window > when I use the help-functions (like ?, help.search() etc.)? > Yes, from the NEWS for R 2.10.1: * Added "use.external.help" preference ent

Re: [R-SIG-Mac] open help in browser

2011-02-03 Thread Simon Urbanek
be fixed in r5682 - so please check tonight's GUI build tomorrow. Thanks, Simon > On 3 February 2011 21:08, Simon Urbanek wrote: > > On Feb 3, 2011, at 3:31 PM, DONG Keren wrote: > > > Hello, > > > > Is there a way to open help files in the default web bro

Re: [R-SIG-Mac] GUI data editor

2011-02-05 Thread Simon Urbanek
On Feb 5, 2011, at 1:42 PM, Ahnate Lim wrote: > Hello, > > I am confused, is there a GUI data editor that can be invoked by edit()? Yes. For example m=edit(matrix(0,4,4)) or d=edit(iris) > I am looking at the book R in a Nutshell, and there is a picture of a nice > spreadsheet that should c

Re: [R-SIG-Mac] Plotting Chinese characters

2011-02-09 Thread Simon Urbanek
Alberto, you simply need a font that has those characters. For example on 10.6 this works: plot.new(); plot.window(0:1,0:1); text(0.5,0.5,"精市",cex=10,family="Hei") You may want to check your system for fonts that you can use (those that have chinese characters when you click on them in Font Bo

Re: [R-SIG-Mac] system command in OS X failed when ampersand was added to command

2011-03-06 Thread Simon Urbanek
On Mar 6, 2011, at 11:12 AM, Noah Lorang wrote: > I'm not able to replicate using the same setup on several computers, either > with R.app or R running in the terminal, so it's likely something highly > specific to your setup. I'd suggest reinstalling or upgrading R and see if > the problem go

Re: [R-SIG-Mac] would parallel computing help?

2011-03-08 Thread Simon Urbanek
On Mar 8, 2011, at 5:45 AM, Ben Bond-Lamberty wrote: > Alan, > The multicore package is easy to use and, if you problem is indeed > embarrassingly parallel (there's no communication between different > models? how about between chains?) should be straightforward to add. > Note that you'll need to

Re: [R-SIG-Mac] R editor for Mac

2011-03-10 Thread Simon Urbanek
On Mar 10, 2011, at 4:50 PM, Dan Tenenbaum wrote: > Since someone recently mentioned RStudio to me, I thought I would > reactivate this thread in order to mention it: > > http://www.rstudio.org/ > > Seems pretty cool if you want the full IDE experience. > Just a tiny, technical side-comment:

Re: [R-SIG-Mac] GCC v. LLVM

2011-03-11 Thread Simon Urbanek
On Mar 9, 2011, at 8:26 PM, Anirban Mukherjee wrote: > Folks, > > I was wondering what the forward plans are for R on Mac vis-a-vis > apple-gcc/Clang. Xcode 4 was just released with LLVM 2.x. For some definition of "released" - it's not really available to OS X users in general. For all practic

Re: [R-SIG-Mac] R editor for Mac

2011-03-11 Thread Simon Urbanek
On Mar 11, 2011, at 11:25 AM, David Winsemius wrote: > > On Mar 10, 2011, at 5:09 PM, Simon Urbanek wrote: > >> >> On Mar 10, 2011, at 4:50 PM, Dan Tenenbaum wrote: >> >>> Since someone recently mentioned RStudio to me, I thought I would >>>

Re: [R-SIG-Mac] GCC v. LLVM

2011-03-13 Thread Simon Urbanek
Marc, On Mar 13, 2011, at 11:18 AM, Marc Schwartz wrote: > On Mar 11, 2011, at 9:01 AM, Simon Urbanek wrote: > >> On Mar 9, 2011, at 8:26 PM, Anirban Mukherjee wrote: >> >>> Folks, >>> >>> I was wondering what the forward plans are for R on Mac vi

Re: [R-SIG-Mac] GCC v. LLVM

2011-03-13 Thread Simon Urbanek
speculation, all currently released systems come with a set of compilers (even Xcode 3 has LLVM and clang). Cheers, Simon > -Roy > On Mar 13, 2011, at 12:58 PM, Yan Zhou wrote: > >> >> >> On Mar 13, 2011, at 7:44 PM, Berend Hasselman wrote: >

Re: [R-SIG-Mac] new editor coming up

2011-03-18 Thread Simon Urbanek
I'd like to add that everyone is highly encouraged to test the 2.13.0 alpha -- available at http://r.research.att.com/ which contains all the changes Hans mentioned (and implemented ;)). Cheers, Simon On Mar 18, 2011, at 5:45 AM, Hans-Jörg Bibiko wrote: > > On 12 Mar 2011, at 14:32, c...@wit

Re: [R-SIG-Mac] GCC v. LLVM

2011-03-18 Thread Simon Urbanek
On Mar 18, 2011, at 1:22 PM, Ken Knoblauch wrote: > Anirban Mukherjee gmail.com> writes: > >> >> Folks, >> >> I was wondering what the forward plans are for R on Mac vis-a-vis >> apple-gcc/Clang. Xcode 4 was just released with LLVM 2.x. From what I >> can tell, Apple will in the future only s

Re: [R-SIG-Mac] Minor bug on R.app document window

2011-03-20 Thread Simon Urbanek
Paolo, On Mar 18, 2011, at 1:48 PM, Paolo Bosetti wrote: > Dear Simon, > first of all thanks for your effort in providing the community with a very > good GUI for R. > I only wanted bringing to your attention a very minor bug that affects the > document window in R.app: when you resize it, the

Re: [R-SIG-Mac] Here's what Steve said

2011-03-21 Thread Simon Urbanek
;> there's even a list serv for Mac R users. Now I read this in one >>>>>>> of the posts there: >>>>>>> >>>>>>> As Brian (Ripley, professor of applied statistics, Oxford) >>>>>>> pointed out, R doesn'

Re: [R-SIG-Mac] Fighting with lattice output to files

2011-03-21 Thread Simon Urbanek
Ben, On Mar 21, 2011, at 1:01 PM, Ben Haller wrote: > Hi all. I'm trying to use lattice to make some plots with wireframe(). > Ultimately I want to output these plots to PDF files, but I can't get that to > work. I'm battling a number of issues. Note the problem is not the lack of > a pri

Re: [R-SIG-Mac] using RMySQL on OS X 10.6.6 - R 2.12.2

2011-03-24 Thread Simon Urbanek
Jan, can you, please, supply the crash report? Also it would be useful to have a minimal reproducible example and exact details of your MySQL setup (version, where you got it from..) so we can try to reproduce it to track the issue. Thanks, Simon On Mar 24, 2011, at 8:52 AM, Verbesselt, Jan w

Re: [R-SIG-Mac] Compiling R.app with 2.12 on Intel Mac 10.4

2011-03-29 Thread Simon Urbanek
Nick, unfortunately I have no longer any 10.4 machines, but some comments inline. On Mar 29, 2011, at 3:20 AM, Nick Matzke wrote: > Hi all, > > Slightly weird question, I'm mostly hoping there is some obvious thing that I > am missing. > > At the moment, I am stuck on a 10.4 machine (32-bit I

Re: [R-SIG-Mac] Probleme with libpng

2011-03-30 Thread Simon Urbanek
You'll need to supply more details. What are you exactly doing? (reproducible example!) Which packages are you using? (sessionInfo()!) Cheers, Simon On Mar 30, 2011, at 10:56 AM, Guillaume Meurice wrote: > Dear all, > > I've recently upgrade R to : > > R 2.12.2 GUI 1.36 Leopard build 64-bit (

Re: [R-SIG-Mac] unable to install packages on R-2.13

2011-03-30 Thread Simon Urbanek
Baptiste, you likely forgot to install Tcl/Tk libraries from CRAN: http://cran.r-project.org/bin/macosx/tools/tcltk-8.5.5-x11.dmg Cheers, Simon On Mar 25, 2011, at 6:47 PM, baptiste auguie wrote: > Dear list, > > There seems to be something wrong with my installation of R on a > MacBook Pro ru

Re: [R-SIG-Mac] Executing R from perl script called from browser

2011-03-31 Thread Simon Urbanek
Carl, any reason why you're not using more reliable and faster solutions like FastRWeb? ;) Anyway, your R code is not syntactically legal, so I would not be surprised if you don't see anything (open2 doesn't cover STDERR AFAIR). If I were you, I'd not use embedded code to start with -- you'd ma

Re: [R-SIG-Mac] Probleme with libpng

2011-04-05 Thread Simon Urbanek
On Apr 5, 2011, at 9:20 AM, Guillaume Meurice wrote: > Dear Simon, > > I've tried to install the "Cairo" R package, but it fails, raising this error > message : > > ## > configure: error: Cannot use cairo-ft backend, alth

Re: [R-SIG-Mac] Probleme with libpng

2011-04-05 Thread Simon Urbanek
On Apr 5, 2011, at 9:49 AM, Guillaume Meurice wrote: > Dear Simon, > > I have downloaded the binaries for mac os X : > > Cairo_1.4-8.tgz > > and tried to install the package locally. (by sourcing local package). > > During startup - Warning messages: > 1: Setting LC_CTYPE failed, using "C" >

[R-SIG-Mac] Call to test current R 2.13.0 beta and RCs - especially new GUI features!

2011-04-05 Thread Simon Urbanek
It's the time of the year to test the new upcoming R release, but this time I'd like to ask as many users as possible to give the new R a spin, because there are many new features in the Mac GUI which increases the likelihood of bugs. It can be downloaded, as usual, from http://r.research.att.c

Re: [R-SIG-Mac] Which gcc version on mac os?

2011-04-10 Thread Simon Urbanek
On Apr 10, 2011, at 5:41 AM, Christophe Dutang wrote: > Yes I'm using Xcode 3.2.6. So you advise me to use Xcode 3.2.5 with gcc build > 5664 ? > It is not related to your problem but essentially it is safe to use 5664 gfortran with both gcc 5664 and gcc 5666 because the only change between 56

Re: [R-SIG-Mac] biOps and fftw3

2011-04-12 Thread Simon Urbanek
On Apr 12, 2011, at 5:49 PM, Carl Witthoft wrote: > I have successfully installed biOps, at least in the sense that the package > loads and many of the functions work. The question I have now is how to get > biOps to recognize fftw3 during compilation. > > I installed fftw3 from a Terminal se

Re: [R-SIG-Mac] Call to test current R 2.13.0 beta and RCs - especially new GUI features!

2011-04-14 Thread Simon Urbanek
work so it won't know about it when upgrading and thus it won't delete its files. It doesn't install anything. > Sorry about the lack of adventurousness, but I really can't afford to loose > my current stable install as I'm "on-demand" to produce and modif

Re: [R-SIG-Mac] Lion/clang

2011-04-18 Thread Simon Urbanek
Yep. The only issue I had with Lion is that window services detection doesn't work anymore so you get X11 instead of Quartz by default. I'll look into that at some point. Thanks, Simon On Apr 16, 2011, at 11:46 PM, Jan de Leeuw wrote: > Just a little note that R-devel compiles/runs fine (and f

Re: [R-SIG-Mac] Lion/clang

2011-04-18 Thread Simon Urbanek
d not notice the issue because Rprofile.site for my CLI R has >>> options=quartz. As for C++ >>> the only problem I have found with clang so far is with Armadillo (Rcpp is >>> fine). >>> >>> On Apr 18, 2011, at 09:48 , Steve Lianoglou wrote: >&g

Re: [R-SIG-Mac] problem with mac gui and mvtnorm for R2.14.0 (unstable)

2011-04-21 Thread Simon Urbanek
On Apr 20, 2011, at 7:44 PM, William Revelle wrote: > Dear Mac R users and developers, > > mvtnorm when used in the Mac.app Gui crashes R2.14.0 (unstable). > > This does not happen when using R in X windows or when using Rstudio, nor > does it happen with R2.13.0 > > I note that my version of

Re: [R-SIG-Mac] Installing Multiple Versions of R

2011-04-27 Thread Simon Urbanek
On Apr 12, 2011, at 1:27 PM, justin boyd wrote: > I would like to install two versions of R on Mac OSX 10.6.7. > > The two versions I would like to install are 2.10.1 and 12.2.2 for use with > StatET in Eclipse. I have successfully installed and used each version > respectively with StatET in

Re: [R-SIG-Mac] svg & cairo support in 2.12.2 and higher?

2011-04-27 Thread Simon Urbanek
On Apr 27, 2011, at 3:57 AM, Prof Brian Ripley wrote: > Try running 32-bit R on your platform: it does contain cairo support. > (So does my own x86_64 build of 2.13.0: looks like there is/was a problem on > the CRAN build machine. So you could also build R from the sources.) > The current R-2.1

Re: [R-SIG-Mac] import data Mac OS

2011-05-02 Thread Simon Urbanek
...and while we are at this long thread about trivial things, another simple alternative in the GUI is to use file.choose() twinData= read.spss(file.choose(), use.value.labels=T, to.data.frame=T, max.value.labels=Inf, trim.factor.names=F) On May 2, 2011, at 10:08 AM, Timothy Bates wro

Re: [R-SIG-Mac] function hint is missing in 2.13.0

2011-05-07 Thread Simon Urbanek
Can you, please, be more specific as of what you expect to see and what you don't see? The hints work just fine for me. Also note that the preference setting applies to the editor, not the console (which shows hints at all times unless R is busy). Cheers, Simon On May 7, 2011, at 5:50 PM, Rob

Re: [R-SIG-Mac] Installing package from source

2011-05-07 Thread Simon Urbanek
There is a lot of missing pieces, but I bet that your package links unversioned libatlas-MacPro.dylib instead of libRblas.dylib and you don't have the appropriate symlinks in x86_64. (Just for the record: this is "your mileage may vary" setup and is NOT what you get when you install R). There ar

Re: [R-SIG-Mac] multiple console windows for the same Mac R instance

2011-05-10 Thread Simon Urbanek
Frank, On May 10, 2011, at 7:06 PM, Frank Tamborello wrote: > Is there a way that I can have multiple console windows running for the same > instance of R.app/R64.app? I've sometimes found in other IDEs that it can be > handy to have this feature, such as Macintosh Common Lisp's ability to have

Re: [R-SIG-Mac] Where are my packages?

2011-05-19 Thread Simon Urbanek
If you simply want to re-install the same packages you had, it's as simple as install.packages(row.names(installed.packages("~/Library/R/2.12/library"))) Cheers, Simon On May 19, 2011, at 2:58 PM, Kasper Daniel Hansen wrote: > You can have packages two places > (1) system wide > (2) user spe

Re: [R-SIG-Mac] Where are my packages?

2011-05-19 Thread Simon Urbanek
On May 19, 2011, at 3:11 PM, Berend Hasselman wrote: > > On 19-05-2011, at 20:48, Wayne Gray wrote: > >> I just upgraded to 2.13 from 2.12. >> >> As far as I can figure things are working well except that none of the >> packages I downloaded for 2.12 are available to 2.13. That would not be a

Re: [R-SIG-Mac] R plot and graphics fonts on Quartz

2011-05-21 Thread Simon Urbanek
Carlo, On May 21, 2011, at 9:10 AM, Carlo Tambuatco wrote: > This question has probably been asked to death already, I don't know > yet...but when plotting using the Quartz framework on OS X, labels do not > show up unless the sans font family is selected beforehand. > It usually indicates a

Re: [R-SIG-Mac] packages failed to load

2011-05-24 Thread Simon Urbanek
Ian, I agree with Brian. I checked the CRAN binaries of class and deldir and they are correctly linking to 2.13, so I suspect you have old packages in your tree. I don't think this can happen with stock R binary, it seems that at some point you moved packages or there is/was a symlink between so

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-24 Thread Simon Urbanek
On May 24, 2011, at 7:32 PM, Ian Reeve wrote: > Thanks Brian and Simon for the suggestions. > > update.packages(checkBuilt=TRUE) > > fixed the load problem and all the functions I was using in R 2.12 are > running identically in R 2.13.0. > > For future reference, when I update to a new versi

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-25 Thread Simon Urbanek
Well, that's a bit convoluted way (I really don't see the point of that "script") - if you want to re-install packages across R versions (not the topic of this thread!) it is far easier than that and I posted it here just a few days ago: # for packages from user location: install.packages(row.n

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-25 Thread Simon Urbanek
On May 25, 2011, at 7:17 AM, Tom Hopper wrote: > On Wed, May 25, 2011 at 11:50, Prof Brian Ripley wrote: > >> On Wed, 25 May 2011, Tom Hopper wrote: >> >> Brian, >>> >>> Since the problem was fixed by updating packages with checkBuilt=T, >>> wouldn't >>> installing packages fresh using the scr

[R-SIG-Mac] Key bindings in the GUI [Was: ?> as a valid help request]

2011-05-25 Thread Simon Urbanek
On May 25, 2011, at 1:10 PM, David Winsemius wrote: > > On May 25, 2011, at 12:50 PM, Berend Hasselman wrote: > > >> >> Home will move the cursor to the start of a line >> End will move the cursor to the end of a line > > Not on my machine in the GUI. Goes to top or bottom of the console wi

Re: [R-SIG-Mac] ?> as a valid help request

2011-05-25 Thread Simon Urbanek
On May 25, 2011, at 1:41 PM, Timothy Bates wrote: > > Hans said: >> did you try to simply select the function and press CTRL+H or right-click >> for content menu and select "Show Help for current Function”? > > fantastic Hans! > PS: I looked in the help menu and saw nothing like “help on selec

Re: [R-SIG-Mac] R Workspace Browser filterable and sortable (pref by size)

2011-05-26 Thread Simon Urbanek
David, On May 26, 2011, at 1:53 PM, David Winsemius wrote: > > On May 26, 2011, at 1:10 PM, Hans-Jörg Bibiko wrote: > >> >> On 26 May 2011, at 18:19, David Winsemius wrote: >>> On May 26, 2011, at 11:44 AM, Timothy Bates wrote: Fantastic that the revamped editor has variable finding

Re: [R-SIG-Mac] Using X11 from the mac terminal

2011-06-06 Thread Simon Urbanek
If you are like me and absolutely hate the Apple auto-X11 setting and disabled it then something like X11(":0.0") should work *after* you start X11. If in doubt, open the xterm and look at echo $DISPLAY sometimes it may be something like :2 instead (it depends on your other X11 processes, weather

Re: [R-SIG-Mac] Making R packages on a Mac

2011-06-08 Thread Simon Urbanek
On Jun 8, 2011, at 10:21 PM, Murray Jorgensen wrote: > I want to use some of my R scripts and datasets as a basis for an R package. > I have been advised to avoid trying to do this under Windows so I thought I > would see what I can do on my iMac, which runs Leopard. > > Can any members of this

Re: [R-SIG-Mac] R.app GUI crashes on startup -- moved Rhistory, no Rdata, no crash menu

2011-06-16 Thread Simon Urbanek
Michael, On Jun 16, 2011, at 8:40 PM, Michael Gilbert wrote: > Hi — > > As my first post on this list, I'll try to be complete but succinct. > > This is the symptom described in the R for Max OSX FAQ 12.16: "R.app GUI > crashes on startup" This started for me on Version 2.13, running on Mac OS

Re: [R-SIG-Mac] perhaps change working directory in the plist? (was: R.app GUI crashes on startup...)

2011-06-20 Thread Simon Urbanek
On Jun 19, 2011, at 7:44 PM, Michael C Gilbert wrote: > > On Jun 17, 2011, at 10:41 AM, Michael C Gilbert wrote: > >>> The .RData might be in your R working directory. >>> If you don't know what your setting was, you can find it in the >>> ~/Library/Preferences/org.R-project.R.plist file. >>

Re: [R-SIG-Mac] GEO querry, Rcurl, and paths

2011-06-20 Thread Simon Urbanek
On Jun 20, 2011, at 12:32 PM, Julin Maloof wrote: > Hello, > > Not sure if this is a mac problem or not, so feel free to suggest a > redirect. > It's not, and it has nothing to do with your subject line, either. GEOquery forces download type to curl (no idea why) and none of the external met

Re: [R-SIG-Mac] GEO querry, Rcurl, and paths

2011-06-20 Thread Simon Urbanek
On Jun 20, 2011, at 1:34 PM, Sean Davis wrote: > On Mon, Jun 20, 2011 at 1:27 PM, Simon Urbanek > wrote: >> >> On Jun 20, 2011, at 12:32 PM, Julin Maloof wrote: >> >>> Hello, >>> >>> Not sure if this is a mac problem or not, so feel free t

Re: [R-SIG-Mac] Package Installation 'Notes' Question

2011-06-28 Thread Simon Urbanek
Robert, I don't think we can help you unless you point us to your package to reproduce the issue. The "no visible binding" message is very common saying that you use unbound variables with often indicates possible bugs (typos etc.). Cheers, Simon On Jun 27, 2011, at 4:10 PM, McGehee, Robert

Re: [R-SIG-Mac] multicore package: collecting results

2011-06-29 Thread Simon Urbanek
On Jun 29, 2011, at 2:59 PM, Mike Lawrence wrote: > Is the slowdown happening while mclapply runs or while you're doing > the rbind? If the latter, I wonder if the code below is more efficient > than using rbind inside a loop: > > my_df = do.call( rbind , my_list_from_mclapply ) > Another pote

Re: [R-SIG-Mac] ./configure cannot use Fortran

2011-06-29 Thread Simon Urbanek
On Jun 29, 2011, at 11:29 PM, robin hankin wrote: > Hi > > macosx 10.6.7, brand new machine. > > Trying to compile R 2.13.0 from sources. > > As per the mac faq, I have installed Xcode 3.2.6 and gfortran 4.2.3, > downloaded > directly from the link on the macOSX-FAQ page. > > The $PATH seems

Re: [R-SIG-Mac] multicore package: collecting results

2011-06-30 Thread Simon Urbanek
vels(all$factor) <- c("A","B") > ... > utilisateur système écoulé > 4.852 2.349 7.038 > >> my_df = do.call(rbind, dl) > utilisateur système écoulé > 9.791 5.411 15.039 > > Thanks to both of

Re: [R-SIG-Mac] multicore package: collecting results

2011-06-30 Thread Simon Urbanek
On Jun 30, 2011, at 11:19 AM, Vincent Aubanel wrote: > > Le 30 juin 2011 à 15:36, Simon Urbanek a écrit : > >> >> On Jun 30, 2011, at 7:28 AM, Vincent Aubanel wrote: >> >>> Thanks for this, it's now dead fast, as one could conceivably expect. &

Re: [R-SIG-Mac] test failures

2011-06-30 Thread Simon Urbanek
FWIW R built the official way doesn't have such problems, so I would not be surprised that it is an issue with your toolchain and/or the way you build R. Fink has been historically known for having issues with compilers (and library mismatches) so I would suggest looking at your end of the affa

Re: [R-SIG-Mac] building a package on a Mac: pdflatex

2011-07-05 Thread Simon Urbanek
Federico, both are entirely irrelevant - run system("pdflatex --version") in R - that is the only thing that counts. If it shows an error, then you don't have pdflatex on your PATH which would be the problem. As a side note, you are showing two separate TeX packages which may not help you to fin

Re: [R-SIG-Mac] building a package on a Mac: pdflatex

2011-07-05 Thread Simon Urbanek
On Jul 5, 2011, at 9:10 AM, Federico Calboli wrote: > Simon, > >> both are entirely irrelevant - run >> system("pdflatex --version") >> in R - that is the only thing that counts. If it shows an error, then you >> don't have pdflatex on your PATH which would be the problem. As a side note, >> y

Re: [R-SIG-Mac] building a package on a Mac: pdflatex

2011-07-05 Thread Simon Urbanek
On Jul 5, 2011, at 9:48 AM, David Winsemius wrote: > > On Jul 5, 2011, at 9:10 AM, Federico Calboli wrote: > >> Simon, >> >>> both are entirely irrelevant - run >>> system("pdflatex --version") >>> in R - that is the only thing that counts. If it shows an error, then you >>> don't have pdflat

Re: [R-SIG-Mac] download.file suggestion: if(OSX){ use curl}

2011-07-07 Thread Simon Urbanek
On Jul 4, 2011, at 7:38 AM, Timothy Bates wrote: > Dear R mac users, > > As services that enforce secure connections like https sftp proliferate, it > would be nice if R could handle accessing files over the secure services. > > Currently download.file() doesn’t handle https (or anything secur

Re: [R-SIG-Mac] download.file suggestion: if(OSX){ use curl}

2011-07-07 Thread Simon Urbanek
s (for instance https://) are supported via use of helpers > such as curl which can be set via the option of > download.file. > #endif > > With an example of how to do that. Thoughts welcome. > > On 7 Jul 2011, at 2:33 PM, Simon Urbanek wrote: >> On Jul 4, 2011, at 7:3

Re: [R-SIG-Mac] source compile R -- emutls_get_address | libgomp.1.dylib

2011-07-07 Thread Simon Urbanek
On Jul 7, 2011, at 9:41 PM, Benton, Paul wrote: > Dear R mac people, > > I have some code that I would like to run as fast as possible. After reading > some blogs I decided that I should try and install R from source again. The CRAN binary is pretty much as fast at it gets, even with additiona

Re: [R-SIG-Mac] R CMD SHLIB produces make: *** No rule to make target "R.o", needed by "R.so"

2011-07-09 Thread Simon Urbanek
On Jul 9, 2011, at 2:51 PM, Chien Lin Terry Huang wrote: > Hi there, > > I have been trying to run some C code in R. After following various > instructions on the internet still no avail. > This is what I did: > > In the R.c file, I have the following: > > == >

Re: [R-SIG-Mac] bug in R.app GUI 1.40 for Mac when running R (Under development (unstable)

2011-07-10 Thread Simon Urbanek
Bill, I highly doubt that this has anything to do with the GUI as it's not even involved in the trace. Also I can't reproduce it with the latest nightly build even on 10.5.8: > library(mvtnorm) > sessionInfo() R Under development (unstable) (2011-07-09 r56345) Platform: i386-apple-darwin9.8.0/i

Re: [R-SIG-Mac] gfortran, tclck and /usr/local

2011-07-11 Thread Simon Urbanek
On Jul 11, 2011, at 12:05 PM, Federico Calboli wrote: > Hi, > > can I ask if anyone can tell me which of these files belongs to the Gfortran > and tcltk R Mac tools instalation please: > I suppose you mean GNU Fortran - but which one? The recent ones live along Xcode so the answer would be n

Re: [R-SIG-Mac] last successful build of R-devel?

2011-07-11 Thread Simon Urbanek
On Jul 11, 2011, at 12:16 PM, Vincent Carey wrote: > is there a location where the last successful build of R-devel binary for > macosx can be retrieved? http://r.research.att.com/R-devel-leopard.pkg > the build for jul 11 is noted as failed at r.research.att.com > Yes, R-devel failed chec

Re: [R-SIG-Mac] last successful build of R-devel?

2011-07-11 Thread Simon Urbanek
On Jul 11, 2011, at 12:29 PM, Simon Urbanek wrote: > > On Jul 11, 2011, at 12:16 PM, Vincent Carey wrote: > >> is there a location where the last successful build of R-devel binary for >> macosx can be retrieved? > > http://r.research.att.com/R-devel-leopard.pkg

Re: [R-SIG-Mac] last successful build of R-devel?

2011-07-11 Thread Simon Urbanek
ave maybe for archive.org) and I don't keep them around, either. It is something that could be addressed, but then R-devel is supposed to be "under development" so in a sense it's a feature of the branch... Cheers, Simon > On Mon, Jul 11, 2011 at 12:33 PM, Simon Urbanek

Re: [R-SIG-Mac] gfortran, tclck and /usr/local

2011-07-11 Thread Simon Urbanek
On Jul 11, 2011, at 12:56 PM, Federico Calboli wrote: > On 11 Jul 2011, at 17:27, Simon Urbanek wrote: > >> >> On Jul 11, 2011, at 12:05 PM, Federico Calboli wrote: >> >>> Hi, >>> >>> can I ask if anyone can tell me which of these files

Re: [R-SIG-Mac] gfortran, tclck and /usr/local

2011-07-11 Thread Simon Urbanek
On Jul 11, 2011, at 12:36 PM, Federico Calboli wrote: > > On 11 Jul 2011, at 17:27, Simon Urbanek wrote: > >> >> On Jul 11, 2011, at 12:05 PM, Federico Calboli wrote: >> >>> Hi, >>> >>> can I ask if anyone can tell me which of these fi

Re: [R-SIG-Mac] Tcltk hangs when I invoke RCommander

2011-07-12 Thread Simon Urbanek
Andy, please check that you have X11 installed. Also see whether clicking on the X11 icon in the GUI toolbar does start X11. Finally, try setting Sys.setenv(DISPLAY=":0.0") before loading tcltk/Rcmdr. If that doesn't help, please send me the crash log. Thanks, Simon On Jul 12, 2011, at 4:4

Re: [R-SIG-Mac] R run time question

2011-07-13 Thread Simon Urbanek
On Jul 13, 2011, at 3:50 PM, Steven McKinney wrote: > > > >> -Original Message- >> From: r-sig-mac-boun...@r-project.org >> [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of Wayne Gray >> Sent: July-13-11 12:25 PM >> To: r-sig-mac@r-project.org >> Subject: [R-SIG-Mac] R run time q

Re: [R-SIG-Mac] GUI bracket-matching and window positioning

2011-07-14 Thread Simon Urbanek
On Jul 14, 2011, at 2:45 PM, Hans-Jörg Bibiko wrote: > Hi Tim, > > thanks for the report. > > On 14 Jul 2011, at 17:30, Tim Cole wrote: > >> 1. I'm curious what determines where new editor and quartz windows are >> positioned. Usually editor windows appear in the middle of my screen, and >>

Re: [R-SIG-Mac] R-Gui with remote execution?

2011-07-15 Thread Simon Urbanek
On Jul 15, 2011, at 3:20 PM, Robert Chatfield wrote: > We have three Macs, one with considerably more storage and > processor power. Storage requirements are probably most > important to us. > > Is there a way to run R-Gui on one mac but have the > execution on a remote mac? (I know that volu

Re: [R-SIG-Mac] R-Gui with remote execution?

2011-07-15 Thread Simon Urbanek
On Jul 15, 2011, at 3:20 PM, Robert Chatfield wrote: > We have three Macs, one with considerably more storage and > processor power. Storage requirements are probably most > important to us. > > Is there a way to run R-Gui on one mac but have the > execution on a remote mac? (I know that volu

Re: [R-SIG-Mac] R-Gui with remote execution?

2011-07-15 Thread Simon Urbanek
On Jul 15, 2011, at 6:08 PM, Steven McKinney wrote: > > >> -Original Message- >> From: r-sig-mac-boun...@r-project.org >> [mailto:r-sig-mac-boun...@r-project.org] On Behalf Of Simon >> Urbanek >> Sent: July-15-11 12:54 PM >> To: Rober

Re: [R-SIG-Mac] up-arrow in console

2011-07-19 Thread Simon Urbanek
Check "cleanup history entries" in the Preferences if you don't like this. It is in fact the default AFAIR so I'm not sure why it's disabled for you. Cheers, S On Jul 19, 2011, at 12:31 PM, Day, Roger S wrote: > Hi, Hans, > > Got another "curiosity" for you! > > A changed behavior in the new

Re: [R-SIG-Mac] Error in plot.new() : figure margins too large

2011-07-20 Thread Simon Urbanek
On Jul 20, 2011, at 5:55 AM, Timothy Bates wrote: > Dear Mac R users, > > Not sure if this is mac/quartz specific or not. > > With my default graph size (about 3*3 inches), this code: > > layout(matrix(c(1, 2, 3, 3), 2, byrow = TRUE)) > plot(1:10); plot(11:20); plot(21:40) > > > Gives the er

[R-SIG-Mac] Lion

2011-07-22 Thread Simon Urbanek
Since I got a few private e-mails concerning Lion, this is just to say that nothing changed since the last Lion post here a while ago (you'll still have to open Quartz explicitly in command line R). R works out of the box and you have the choice of using the CRAN Fortran (/usr/local) or the Xcod

Re: [R-SIG-Mac] Lion

2011-07-23 Thread Simon Urbanek
On Jul 23, 2011, at 2:11 PM, Federico Calboli wrote: > On 23 Jul 2011, at 00:44, Simon Urbanek wrote: > >> Since I got a few private e-mails concerning Lion, this is just to say that >> nothing changed since the last Lion post here a while ago (you'll still have >&

Re: [R-SIG-Mac] LLVM gfortran on Lion

2011-07-25 Thread Simon Urbanek
Bill, On Jul 24, 2011, at 11:34 PM, Bill Northcott wrote: > I was browsing the opensource packages for Xcode 4.1 and I notice that > LLVM-gcc sources seem to include gfortran. Whereas the gcc sources do not. > > However, I have installed Xcode 4.1 on Lion and it does not include gfortran. >

Re: [R-SIG-Mac] libVec and Lion

2011-07-26 Thread Simon Urbanek
On Jul 26, 2011, at 4:15 AM, Andreas Noack Jensen wrote: > I believe I have a veclib problem. I have just upgraded to Lion from > Snow Leopard on my MacBook Pro 15'', medio 2009 and done a fresh install of > R 2.13.1 and the latest gfortran 4.2.3 from att.research. Unfortunately I am > not abl

Re: [R-SIG-Mac] Compatibility of R and Mac OS 10.7 Lion

2011-07-26 Thread Simon Urbanek
On Jul 25, 2011, at 2:36 PM, Björn Klatt wrote: > Dear R mac users, > > I am currently thinking about updating my system to Mac OS 10.7 (Lion). Does > anyone know about problems or has experiences with the compatibility of R and > Mac OS Lion? > Hint: read the list you are posing to. __

Re: [R-SIG-Mac] cannot install gfortran-lion-5666-3.pkg

2011-07-27 Thread Simon Urbanek
On Jul 27, 2011, at 8:54 AM, Federico Calboli wrote: > As a test I downloaded and tried to install gfortran-lion-5666-3.pkg. It does > not like the fact that Xcode 4.1 comes with gcc build 5658, rather than > 5666.3, and it does not install. > > Lion, Xcode 4.1 > > gcc --version > i686-apple-d

Re: [R-SIG-Mac] View large quartz windows using R GUI

2011-07-28 Thread Simon Urbanek
On Jul 26, 2011, at 12:42 AM, Annabel Smith wrote: > Hello, > > I'm using Mac OS 10.6.8, R 2.13.1, R.app GUI 1.41 > > I have searched for help on this and found only midly related topics > (http://tolstoy.newcastle.edu.au/R/help/05/10/13563.html , > http://tolstoy.newcastle.edu.au/R/help/05/

Re: [R-SIG-Mac] Spinning wheel when running script

2011-07-28 Thread Simon Urbanek
On Jul 28, 2011, at 8:32 AM, Rick Johnson wrote: > Hello, > I am new to Mac OS having moved off Windows PCs, and I am struggling to > figure out how to use R project on the Mac. Often when I enter script into > the console, R goes off into a never ending „Not responding‰ state ˆ the > spinning

  1   2   3   4   5   6   7   8   9   10   >