Re: [R-pkg-devel] what is difference between Mac setup of rhub and CRAN

2019-01-31 Thread Jan Wijffels
Yes, that is exactly the problem I'm facing with that R package. Anyone knows how do I find out which ABI issue it is & who should I contact to try to find a solution? Jan Wijffels Statistician www.bnosac.be | +32 486 611708 On Thu, 31 Jan 2019 at 11:59, Gábor Csárdi wrote: > I can reproduce

Re: [R-pkg-devel] what is difference between Mac setup of rhub and CRAN

2019-01-31 Thread Gábor Csárdi
I can reproduce your problem, and indeed it seems that it is a compiler ABI incompatibility issue. I am not sure how it could be fixed, though. With the CRAN compiler it gets stuck here: ### Name: embed_articlespace ### Title: Build a Starspace model for learning the mapping between ### sentenc

Re: [R-pkg-devel] what is difference between Mac setup of rhub and CRAN

2019-01-31 Thread Jan Wijffels
Gabor. Thanks for the input. I unfortunately do not have a Mac at my disposal to check this at that would be indeed the most optimal solution to find out differences in the setups. Is there someone on this mailing list which can comment on the CRAN machines about MacOS to answer What can be a rea

Re: [R-pkg-devel] what is difference between Mac setup of rhub and CRAN

2019-01-31 Thread Gábor Csárdi
See answers inline. On Thu, Jan 31, 2019 at 10:16 AM Jan Wijffels wrote: [...] > The package has C++ code which relies on clang-3.3 or newer and relies on > -pthread. It has in it's src/Makevars > (https://github.com/bnosac/ruimtehol/blob/master/src/Makevars) > > PKG_LIBS = -pthread > PKG_CPPFL

Re: [R-pkg-devel] what is difference between Mac setup of rhub and CRAN

2019-01-31 Thread Jan Wijffels
Gabor. Thanks for the input. I don't have a Mac machine at my disposal but another user of the package tried helping out debugging here: https://github.com/bnosac/ruimtehol/issues/10 The package has C++ code which relies on clang-3.3 or newer and relies on -pthread. It has in it's src/Makevars (

Re: [R-pkg-devel] what is difference between Mac setup of rhub and CRAN

2019-01-31 Thread Gábor Csárdi
The R-hub macOS machine is also 10.11.6, and has XCode 8.2.1, but does not use the CRAN clang 4.0.0 compiler currently. Seems like your package has compiled code, so this _might_ matter. Sometimes there are issues when linking C++ libs produced by different compilers, because the ABIs can be slight

[R-pkg-devel] what is difference between Mac setup of rhub and CRAN

2019-01-31 Thread Jan Wijffels
Hello, I'm trying to find out what is different between the rhub and CRAN software for Mac OS to fix the FAIL statement on a package I maintain called ruimtehol (https://CRAN.R-project.org/package=ruimtehol). The package builds and checks fine on all CRAN platforms except Mac OS r-release-osx-x86_