Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-16 Thread Dirk Eddelbuettel
On 16 May 2024 at 05:34, Duncan Murdoch wrote: | I forget now, but presumably the thinking at the time was that Suggested | packages would always be available for building and checking vignettes. Yes. I argued for years (cf https://dirk.eddelbuettel.com/blog/2017/03/22/ from seven (!!) years ag

Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-16 Thread Sebastian Meyer
Am 16.05.24 um 11:34 schrieb Duncan Murdoch: On 2024-05-16 4:15 a.m., Sebastian Meyer wrote: Am 15.05.24 um 00:09 schrieb Lluís Revilla: Hi Junhui, There is a separate log for checking if your package works without suggested packages: in the StepReg results The noSuggests title leads to: https

Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-16 Thread Uwe Ligges
On 16.05.2024 10:15, Sebastian Meyer wrote: Am 15.05.24 um 00:09 schrieb Lluís Revilla: Hi Junhui, There is a separate log for checking if your package works without suggested packages: in the StepReg results The noSuggests title leads to: https://www.stats.ox.ac.uk/pub/bdr/noSuggests/StepReg

Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-16 Thread Duncan Murdoch
On 2024-05-16 4:15 a.m., Sebastian Meyer wrote: Am 15.05.24 um 00:09 schrieb Lluís Revilla: Hi Junhui, There is a separate log for checking if your package works without suggested packages: in the StepReg results The noSuggests title leads to: https://www.stats.ox.ac.uk/pub/bdr/noSuggests/StepR

Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-16 Thread Sebastian Meyer
Am 15.05.24 um 00:09 schrieb Lluís Revilla: Hi Junhui, There is a separate log for checking if your package works without suggested packages: in the StepReg results The noSuggests title leads to: https://www.stats.ox.ac.uk/pub/bdr/noSuggests/StepReg.out Where you can see that it fails if a user

Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-15 Thread Li, Junhui
check. Best, Junhui From: Llu�s Revilla Date: Tuesday, May 14, 2024 at 18:09 To: Li, Junhui Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages Hi Junhui, There is a separate log for checking if your package works without suggested

Re: [R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-14 Thread Lluís Revilla
Hi Junhui, There is a separate log for checking if your package works without suggested packages: in the StepReg results The noSuggests title leads to: https://www.stats.ox.ac.uk/pub/bdr/noSuggests/StepReg.out Where you can see that it fails if a user don't have BiocStyle installed. I don't know i

[R-pkg-devel] CRAN packages dependency on bioconductor packages

2024-05-14 Thread Li, Junhui
Hi everyone, I recently developed an R package called 'StepReg' and used the Bioconductor R package 'BiocStyle' in my vignettes, as shown below: output: BiocStyle::html_document: toc_float: true BiocStyle::pdf_document: default In my DESCRIPTION file, I added 'BiocStyle' to the Suggests