Re: [R-pkg-devel] WARNING: A complete check needs the 'checkbashisms' script.

2020-08-12 Thread brian knaus
Thank you again for your responses Rodrigo Tobar. I'm happy to call this a solution. I've got some testing to do but I'm hoping to get this sent back to CRAN soon. Thank you for your help! Brian On Tue, Aug 11, 2020 at 11:28 PM Rodrigo Tobar wrote: > Hi Brian, > > On

Re: [R-pkg-devel] WARNING: A complete check needs the 'checkbashisms' script.

2020-08-11 Thread brian knaus
stall it locally so the R checks can proceed without the warning > (or set _R_CHECK_BASHISMS_ to FALSE to skip that particular check, again > locally), but that shouldn't be a problem in CRAN, as it should be > installed there already. > > Cheers, > > Rodrigo > >

[R-pkg-devel] WARNING: A complete check needs the 'checkbashisms' script.

2020-08-10 Thread brian knaus
Hi R-pkg-devel, My package https://github.com/knausb/vcfR has been archived on CRAN because I was asked by CRAN to address issues that I was unable to address before the deadline I was given. The issue I'm struggling with is that when I use ``` R CMD check --as-cran vcfR_1.12.0.tar.gz ``` I ge

Re: [R-pkg-devel] inappropriate maintainer moniker

2020-07-26 Thread brian knaus
ddress). > > On 7/22/20 7:05 PM, brian knaus wrote: > > Hello R-pkg-devel, > > > > Our package vcfR, > > > > https://github.com/knausb/vcfR > > > > has been removed from CRAN because they asked me to make changes that I > > have not been a

[R-pkg-devel] inappropriate maintainer moniker

2020-07-22 Thread brian knaus
here I receive mail from various mailing lists I've signed up for. For example, mail I receive from "R-pkg-devel" comes to this address. So I feel that this is confusion on the side of CRAN. Does anyone see a reason for *why* this may be consider

Re: [R-pkg-devel] r-hub status

2020-02-04 Thread brian knaus
gt; > > The question is why you don't always get that warning. > > Because there was a bug in R that the warnings was not produced for a > long time, and this is now fixed in recent verisons of R-devel. Hence ou > only get it here. > > Best, > Uwe Ligges > > &g

[R-pkg-devel] r-hub status

2020-02-04 Thread brian knaus
Does anyone know the current status of r-hub? My package ( https://github.com/knausb/vcfR) is throwing warnings on R-devel ( https://cran.r-project.org/web/checks/check_results_vcfR.html) and CRAN has asked me to fix it. Tried r-hub but it failed. https://builder.r-hub.io/status/vcfR_1.9.0.9000.ta

Re: [R-pkg-devel] rhub, docker and Bioconductor

2020-01-07 Thread brian knaus
I was tracking down problems with my package yesterday that were specific to r-devel and I had trouble reproducing the errors. I believe the issue is that the rhub and the docker/rocker r-devel were not using the most recent version of r-devel. My solution was to add r-devel to my travis ci. https