Re: [R-pkg-devel] Two errors

: Sharon Bewick Cc: Michael Chirico , R Package Development Subject: Re: [R-pkg-devel] Two errors This Message Is From An External Sender: Use caution when opening links or attachments if you do not recognize the sender. I believe the suggestion was that you should alternatively write: .Call

Re: [R-pkg-devel] Two errors

obal variable ‘seq_root2tip’ Undefined global functions or variables: seq_root2tip Any thoughts? Sharon From: Josiah Parry Date: Thursday, July 3, 2025 at 4:46 PM To: Sharon Bewick Cc: Michael Chirico , R Package Development Subject: Re: [R-pkg-devel] Two errors This Message Is From An Externa

Re: [R-pkg-devel] Two errors

ichael Chirico Date: Thursday, July 3, 2025 at 4:13 PM To: Sharon Bewick Cc: R Package Development Subject: Re: [R-pkg-devel] Two errors This Message Is From An External Sender: Use caution when opening links or attachments if you do not recognize the sender. 1. all functions in R are variables.

Re: [R-pkg-devel] Two errors

The problem is that the function that ape exports is way too slow. Using C directly really sped up my program, which is a bit slow even at that… From: Duncan Murdoch Date: Thursday, July 3, 2025 at 4:13 PM To: Sharon Bewick , r-package-devel@r-project.org Subject: Re: [R-pkg-devel] Two

[R-pkg-devel] Two errors

1. I�m trying to upload my R package. However, I use the ape function seq_root2tip but for the sake of speed am calling it using .Call: toroot<-.Call(seq_root2tip, nt$edge, length(nt$tip.label), nt$Nnode) How do I get R to recognize the seq_root2tip function from ape in this C call? It is throw

[R-pkg-devel] Trouble with dependencies on phyloseq and microViz

I’m having trouble with: r-oldrel-macos-arm64 and r-oldrel-macos-x86_64 flagging an error because I have a dependency on phyloseq, whic

[R-pkg-devel] I'm trying to include phyloseq as a CRAN package dependency and for the life of me I can't figure it out

I had this package included in a previous upload and it didn’t cause errors. However, now it is getting flagged as an error. I’ve included biocViews: phyloseq in the DESCRIPTION file, but that did not help. Unfortunately, I cannot make phyloseq a weak dependency. It can be installed through Bio