[R-pkg-devel] No prebuilt vignette index

2019-12-15 Thread Charith Karunarathna
Hi Everyone, I wonder how to address the following NOTE that I am getting from the win-builder check. " * checking CRAN incoming feasibility ... NOTE Maintainer: 'Charith Karunarathna ' Package has a VignetteBuilder field but no prebuilt vignette index. " I am in

[R-pkg-devel] No prebuilt vignette index

2019-12-12 Thread Charith Karunarathna
Reposting... Hi Everyone, I wonder how to address the following NOTE that I am getting from the win-builder check. " * checking CRAN incoming feasibility ... NOTE Maintainer: 'Charith Karunarathna ' Package has a VignetteBuilder field but no prebuilt vignette index. "

[R-pkg-devel] No prebuilt vignette index

2019-12-11 Thread Charith Karunarathna
Hi Everyone, I wonder how to address the following NOTE that I am getting from the win-builder check. " * checking CRAN incoming feasibility ... NOTE Maintainer: 'Charith Karunarathna ' Package has a VignetteBuilder field but no prebuilt vignette index. " I am in

[R-pkg-devel] PDF Vignette

2019-12-06 Thread Charith Karunarathna
Dear All, I am trying to add a PDF file (perfectphyloR.pdf) for vignette of my R package (perfectphyloR). When I check my package using win-builder, I am getting the following warning message: * checking re-building of vignette outputs ... [2s] WARNING Error in re-building vignettes: ... Wa

Re: [R-pkg-devel] Static PDF Vignette

2019-12-05 Thread Charith Karunarathna
utput PDF file produced! Execution halted Could someone help me fix this issue? Thank you! Charith. ________ From: I�aki Ucar Sent: Wednesday, December 4, 2019 2:46:25 PM To: Charith Karunarathna Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] Static PDF Vig

[R-pkg-devel] Static PDF Vignette

2019-12-04 Thread Charith Karunarathna
Hi, I followed these instructions, (https://www.markvanderloo.eu/yaRb/2019/01/11/add-a-static-pdf-vignette-to-an-r-package/), to add a pdf (perfectphyloR.pdf) as the vignette of my package (perfectphyloR). However, I am getting the following Warning message and NOTE from the win-builder: W

[R-pkg-devel] bioRxiv Preprint as Vignette

2019-11-30 Thread Charith Karunarathna
Hi, I am just wondering about how I can include a bioRxiv preprint as the vignette of my R package. It's a pdf file already in bioRxiv. Could you please let me know how I can include that file as vignette? Thank you in advance! Charith. [[alternative HTML version deleted]] _

[R-pkg-devel] Warning Message on Vignettes

2019-07-02 Thread Charith Karunarathna
(Reposting..) Hi everyone, I am getting following two warnings when I submit my R package (perfectphyloR) to CRAN. Warning 1: * checking files in 'vignettes' ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': 'perfectphyloR.html', 'perfectphyloR

[R-pkg-devel] Warning Message on Vignettes

2019-06-29 Thread Charith Karunarathna
Hi, I am getting following two warnings when I submit my R package (perfectphyloR) to CRAN. Warning 1: * checking files in 'vignettes' ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': 'perfectphyloR.html', 'perfectphyloR.html.asis' Warning 2:

[R-pkg-devel] CRAN NOTE: SHLIB_OPENMP_*FLAGS in Makefiles

2019-06-19 Thread Charith Karunarathna
Hi, I got the following NOTES after submitting my R package to CRAN for the first time. " Flavor: r-devel-windows-ix86+x86_64 Check: use of SHLIB_OPENMP_*FLAGS in Makefiles, Result: NOTE src/Makevars.win: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but not in PKG_LIBS src/M