Thank you Andrew for offering to help. The R-hub package sorted me out for
testing for various OSs.
And Ivan: thank you very much- you were spot on. Swapping the order of
config.h and system headers in all my C files made the compilation work in
my R-hub tests. Hopefully ExomeDepth is now about to
Thank you very much for your answers.
I finally noticed that the issue comes from the numerical optimization, in
which I use the class MFuncGrad of the package RcppNumerical. Is there any
problem in using this class? This is the only way I know to compute integrals
of perform numerical optimiza
On 20 October 2022 at 14:46, Ivan Krylov wrote:
| В Thu, 20 Oct 2022 12:43:30 +0200
| Elysée Aristide пишет:
|
| > What I understood is that it is better to use Rcpp functions. So I
| > used:
| >
| > Rcpp::Rcout << "beta: \n";
| > Rcpp::print(betacpp);
| > Rcpp::Rcout << "log-likelihood: " <<
В Thu, 20 Oct 2022 12:43:30 +0200
Elysée Aristide пишет:
> What I understood is that it is better to use Rcpp functions. So I
> used:
>
> Rcpp::Rcout << "beta: \n";
> Rcpp::print(betacpp);
> Rcpp::Rcout << "log-likelihood: " << llh << "\n";
This seems to be a right way of printing from Rcpp cod
Hi,
On Thu, 20 Oct 2022 at 12:42, Elysée Aristide wrote:
>
> Greetings,
>
> In my CDatanet package, I want to print texts and values during a numerical
> optimization process. I saw in many posts that CRAN is not happy with
> sd::cout and sd::endl. What I understood is that it is better to use Rc
Greetings,
In my CDatanet package, I want to print texts and values during a numerical
optimization process. I saw in many posts that CRAN is not happy with
sd::cout and sd::endl. What I understood is that it is better to use Rcpp
functions. So I used:
Rcpp::Rcout << "beta: \n";
Rcpp::print(betac
> Duncan Murdoch
> on Wed, 19 Oct 2022 14:55:24 -0400 writes:
> It seems that this could be mostly avoided if instead of caching copies
> of Matrix methods when buildmer was installed, R would cache promises to
> get those methods. Then if the method for some particular
On Wed, 19 Oct 2022 23:39:57 +0100
Vincent Plagnol wrote:
> gcc-12 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include
> -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall
> -Wstrict-prototypes -pedantic -mtune=native -c VP_gamma.c -o
> VP_gamma.o
> /usr/include/x86
