[R-pkg-devel] Checkpoint package failing CRAN checks

2020-01-08 Thread Hong Ooi via R-package-devel
Hi all, I'm the new (as of 6 months ago) maintainer of checkpoint. If you're not familiar with it, checkpoint is a package to help with reproducible analysis: you give it a particular snapshot date from the MRAN site, and it installs the packages that your project depends on from that snapshot.

Re: [R-pkg-devel] suggestion: conda for third-party software

2020-01-08 Thread Kevin Ushey
It would also be worth looking at the basilisk package: https://github.com/LTLA/basilisk where the approach used there is to instead embed a Conda installation as part of the R package itself. This comes with the benefit that it's now the package author's responsibility to maintain the Conda inst

Re: [R-pkg-devel] debian-clang error with class

2020-01-08 Thread Christian Martin Hennig
Great, thanks! On 1/8/20 7:18 PM, Fernando Roa wrote: Take a look at https://stat.ethz.ch/pipermail/r-package-devel/2019q4/004675.html Best, On Wed, Jan 8, 2020 at 3:09 PM Christian Martin Hennig mailto:christian.hen...@unibo.it>> wrote: Hi there, I have an ERROR in my fpc package on debian-cl

Re: [R-pkg-devel] debian-clang error with class

2020-01-08 Thread Fernando Roa
Take a look at https://stat.ethz.ch/pipermail/r-package-devel/2019q4/004675.html Best, On Wed, Jan 8, 2020 at 3:09 PM Christian Martin Hennig < christian.hen...@unibo.it> wrote: > Hi there, > > I have an ERROR in my fpc package on debian-clang that I currently > cannot reproduce due to the fact

[R-pkg-devel] debian-clang error with class

2020-01-08 Thread Christian Martin Hennig
Hi there, I have an ERROR in my fpc package on debian-clang that I currently cannot reproduce due to the fact that rhub is apparently affected by a bug on that platform that doesn't allow me to install Bioconductor packages. The description is "--- failure: the condition has length > 1 ---". I

Re: [R-pkg-devel] pandoc lua filter error with win devel check

2020-01-08 Thread Fernando Roa
Hi, I added SystemRequirements: pandoc (>= 2.0) to DESCRIPTION as you suggested; submission failed, the automatic check of package submission to CRAN had the error I got before with check_win_devel: "pandoc.exe: unrecognized option `--lua-filter=refs/multiple-bibliographies.lua' Error: processing

Re: [R-pkg-devel] suggestion: conda for third-party software

2020-01-08 Thread Kevin Ushey
On Tue, Jan 7, 2020 at 10:42 PM Sokol Serguei wrote: > > Thanks for this hint. > > Le 07/01/2020 à 20:47, Kevin Ushey a écrit : > > The newest version of reticulate does something very similar: R > > packages can declare their Python package dependencies in the > > Config/reticulate field of a DES

Re: [R-pkg-devel] Significant warnings during package checks

2020-01-08 Thread Duncan Murdoch
On 08/01/2020 7:48 a.m., MONSUUR OLAWALE via R-package-devel wrote: Hi R-package-devel team, I submitted my package on CRAN and below errors and warnings seemed to have appeared in the during the automatic check but that did not actually appear when I compile. Any suggestions on how this probl

[R-pkg-devel] Significant warnings during package checks

2020-01-08 Thread MONSUUR OLAWALE via R-package-devel
Hi R-package-devel team, I submitted my package on CRAN and below errors and warnings seemed to have appeared in the during the automatic check but that did not actually appear when I compile. Any suggestions on how this problem could be resolved? * checking whether package BASiNET can be

Re: [R-pkg-devel] suggestion: conda for third-party software

2020-01-08 Thread Serguei Sokol
Le 08/01/2020 à 08:50, Ivan Krylov a écrit : On Tue, 7 Jan 2020 15:49:45 +0100 Serguei Sokol wrote: Currently, many R packages include TPS as part of them thus bloating their sizes and often duplicating files on a given system.  And even when TPS is not included in an R package but is just ins