Re: [R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread Duncan Murdoch
On 13/03/2019 8:34 p.m., David Hugh-Jones wrote: Hi guys That might be it. But there was no error until the latest release - whereas that test has been there for 9 months. The file is written within testthat... is there a new check for this in CRAN? Meanwhile, I am still figuring out how to

Re: [R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread David Hugh-Jones
Hi guys That might be it. But there was no error until the latest release - whereas that test has been there for 9 months. The file is written within testthat... is there a new check for this in CRAN? Meanwhile, I am still figuring out how to debug this problem. I uploaded to r-hub... does anyone

Re: [R-pkg-devel] CRAN incoming checks fail due to non-staged installation

2019-03-13 Thread David Kepplinger
Thank you, Max, for the clarification. I have added the option "StagedInstall: yes" to the DESCRIPTION file, but it doesn't seem to be forcing a staged installation for x64 on Windows. I get the same NOTE now from winbuilder, but with more explanation which could help isolate the problem: install

[R-pkg-devel] staged install fails on Linux VM?

2019-03-13 Thread Ben Bolker
When I try to "R CMD check" a local copy of the lme4 package with recent R-devel it consistently fails as follows *unless* I first "export R_INSTALL_STAGED=0". ** checking absolute paths in shared objects and dynamic libraries mv: cannot move '/media/sf_Documents/Rpkgs/lme4git/lme4.Rcheck/00LOC

Re: [R-pkg-devel] CRAN incoming checks fail due to non-staged installation

2019-03-13 Thread Maxime Turgeon
Hi David, Non-staged installation is something new in R-devel: https://developer.r-project.org/Blog/public/2019/02/14/staged-install/index.html Package maintainers can opt out of it (through DESCRIPTION), and I'm assuming CRAN wants a quick way to know if that was the case when diagnosing a su

Re: [R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread Duncan Murdoch
On 13/03/2019 12:59 p.m., William Dunlap wrote: The complaint test_check("huxtable") -- 1. Failure: Data written in appropriate format (@test-openxlsx.R#101) -- `openxlsx::saveWorkbook(wb, file = "test-xlsx.xlsx", overwrite = TRUE)` produced messages. comes from your call to t

[R-pkg-devel] CRAN incoming checks fail due to non-staged installation

2019-03-13 Thread David Kepplinger
Dear Community, I am trying to update the pense package on CRAN to fix `autoreconf` problems, but the incoming checks fail for Windows (r-devel) with 2 NOTEs. The first NOTE is a HTTP 403 for a http://doi.org URL which I already know about and can not change, but the other NOTE is more obscure to

Re: [R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread Klaus Schliep
On Wed, Mar 13, 2019, 1:13 PM David Hugh-Jones wrote: > Hi Bill, > > I take your point. Meanwhile, though, is there any way to debug the > problem? I’ll assume that making repeated uploads to CRAN is not a viable > approach it would be great if there were a Docker image of their setup > avail

Re: [R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread William Dunlap
You can stick your own version of expect_silent into the test file. Have it print the messages, output, and warnings that it finds. Bill Dunlap TIBCO Software wdunlap tibco.com On Wed, Mar 13, 2019 at 10:13 AM David Hugh-Jones wrote: > Hi Bill, > > I take your point. Meanwhile, though, is the

Re: [R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread David Hugh-Jones
Hi Bill, I take your point. Meanwhile, though, is there any way to debug the problem? I’ll assume that making repeated uploads to CRAN is not a viable approach it would be great if there were a Docker image of their setup available, for example. On Wed, 13 Mar 2019 at 17:00, William Dunlap w

Re: [R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread William Dunlap
The complaint > test_check("huxtable") -- 1. Failure: Data written in appropriate format (@test-openxlsx.R#101) -- `openxlsx::saveWorkbook(wb, file = "test-xlsx.xlsx", overwrite = TRUE)` produced messages. comes from your call to testthat::expect_silent() test_that("Data written in

[R-pkg-devel] How to debug CRAN errors?

2019-03-13 Thread David Hugh-Jones
Hi all, My package has errors on CRAN's Linux and Solaris: https://cran.r-project.org/web/checks/check_results_huxtable.html which I can't reproduce on my local OSX Machine, nor on Linux on Travis. Does anyone have any general hints on how to reproduce and/or debug such errors? Specifically th

Re: [R-pkg-devel] Help request on Rd2pdf | Fwd: [CRAN-pretest-archived] CRAN submission spsh 1.0.190311

2019-03-13 Thread Georgi Boshnakov
Hi, > Turning to the R-Terminal executing /R CMD Rd2pdf/ Leads to: > > Converting Rd files to LaTeX ... > > spsh_1.0.1.tar.gz > > Warning in readLines(f) : line 1 appears to contain an embedded nul You really need to give the exact command you run, it is not just 'R CMD Rd2pdf'. The error me

[R-pkg-devel] Help request on Rd2pdf | Fwd: [CRAN-pretest-archived] CRAN submission spsh 1.0.190311

2019-03-13 Thread Tobias KD Weber
Dear people, I submitted a package to CRAN and got an error on the pdf manual creation (solved other minor issues, full response from cran-submissi...@r-project.org please see email below). The response to an error and warnings detailed: * using log directory 'd:/RCompile/CRANincoming/R-deve

Re: [R-pkg-devel] CRAN review

2019-03-13 Thread Τόλης Χαλκής
Of course we will resubmit. Thank you all for the info. Chalkis Apostolos On Wed, 13 Mar 2019 at 10:05, Maëlle SALMON via R-package-devel < r-package-devel@r-project.org> wrote: > > > > -- Forwarded message -- > From: "Maëlle SALMON" > To: Duncan Murdoch , Henrik Bengtsson < > h

Re: [R-pkg-devel] CRAN review

2019-03-13 Thread Maëlle SALMON via R-package-devel
--- Begin Message --- Sorry, the link was removed (by my copy-pasting it wrongly): https://itsalocke.com/cransays/articles/dashboard Den onsdag 13 mars 2019 08:54:00 CET, Maëlle SALMON via R-package-devel skrev: We at Locke Data have made an hourly updated dashboard based on the FTP

Re: [R-pkg-devel] CRAN review

2019-03-13 Thread Maëlle SALMON via R-package-devel
--- Begin Message --- We at Locke Data have made an hourly updated dashboard based on the FTP server CRAN incoming dashboard • cransays | | | | CRAN incoming dashboard • cransays | | | We hope it makes data more accessible whilst reducing load on the FTP server. Maëlle. Den tis