Re: [R] Put 2 ablines in an "empty plot"

2014-12-05 Thread Chel Hee Lee
.5) > abline(a=0, b=-0.5) Is this what you are looking for? I hope this helps. Chel Hee Lee On 12/05/2014 02:30 AM, Adrien Bonvin wrote: Bonjour Hi everybody, Firs of all, sorry for my terrible English, I would like to know if it’s possible to create an “empty plot” in which i could ad

Re: [R] Rename multiple files in a directory and write renamed files back to directory

2014-12-05 Thread Chel Hee Lee
x27; as shown in the below: > sprintf("%05d", seq(from=200, to=1200, by=500)) [1] "00200" "00700" "01200" I like to read the documentation by typing > help(formatC) > help(sprintf) You may find answers what you wish to get. Documentation has been my

Re: [R] Factors and NaN

2014-12-05 Thread Lee, Chel Hee
sh to make R understand 'NaN' as missing value, it would be a good choice to use reserved keyword 'NA_character' as shown in the below: > x <- factor(c("yes", "yes", "no", NA, "yes", "no", NA_character_)) > x [1] yes yes

Re: [R] Subsetting R 3.1.2

2014-12-05 Thread Lee, Chel Hee
Your question is not clear to me. > x$alpha[1:2] [1] "a" "b" > x$alpha[2] [1] "b" > Is this what you are looking for? I hope this helps. Chel Hee Lee On 12/5/2014 11:12 AM, Dinesh Chowdhary wrote: x <- list(seq = 3:7, alpha = c("a", &quo

Re: [R] need help with withRestarts ?

2014-12-06 Thread Chel Hee Lee
if x < 0.3. x= 0.4246928 Anyway, move to next! [1] 0.2535644 Error is printed if x < 0.3. x= 0.5071288 Anyway, move to next! [1] "error" Error is printed if x < 0.3. x= 0.1941202 Anyway, move to next! (continue) I hope this helps, and thank you so much, Martin Morgan, for your go

Re: [R] Scatter plot for repeated measures

2014-12-06 Thread Chel Hee Lee
It seems that you would like to make a spaghetti plot (in a longitudinal data analysis). You can use the function 'interaction.plot()'. > with(my.df, interaction.plot(TIME, ID, X)) I hope this helps. Chel Hee Lee On 12/06/2014 02:24 AM, arun wrote: Not sure whether it is

Re: [R] Condensing data.frame

2014-12-07 Thread Chel Hee Lee
6.970592 4 6.970592 CID_10.31 CID_10 Acidobacteria1.988448 5 1.988448 CID_10.32 CID_10 Actinobacteria1.644548 6 1.644548 CID_10.33 CID_10 Others 1.582823 7 5.546493 > I hope this helps. Chel Hee Lee On 12/07/2014 08:21 AM, Morway, Eric wrote: Usin

Re: [R] Create previous dates from date with consideration of leap year

2014-12-11 Thread Lee, Chel Hee
1jan20051 2005-01-26 10 10 01feb20031 2003-01-27 11 11 29jan20091 2009-01-24 12 12 03mar20081 2008-02-27 > Leap year is also considered (See the last case 'id=12'). Is this what you are looking for? I hope this helps. Chel Hee Lee On 12/11/2014 9:54 AM, Kuma Ra

Re: [R] combinations between two vectors

2014-12-18 Thread Chel Hee Lee
"5001,20001" "10001,20001" "15001,20001" [11] "1,25001" "5001,25001" "10001,25001" "15001,25001" "20001,25001" > x.idx2 <- upper.tri(x, diag=TRUE) > x[x.idx2] [1] "1,1" "1,

Re: [R] Make 2nd col of 2-col df into header row of same df then adjust col1 data display

2014-12-18 Thread Chel Hee Lee
NANA NA RK.Records_CL V.Other 1005317NA NA 1007183NA NA 1008833NA NA 1012281NA NA 1015285 1 NA 1015315 NA NA 1015322NA NA > Chel H

Re: [R] Add encoded special characters (greek characters) as text to plot

2014-12-18 Thread Chel Hee Lee
t in R. Is this what you are looking for? I hope this helps. I would also appreciate it if you would provide reproducible examples next time. Chel Hee Lee On 12/18/2014 11:48 AM, Jeff Newmiller wrote: Read the posting guide. Th

Re: [R] Make 2nd col of 2-col df into header row of same df then adjust col1 data display

2014-12-18 Thread Chel Hee Lee
iol.Type' where 'factor()' is used. I hope this helps. Chel Hee Lee On 12/18/2014 08:57 PM, Crombie, Burnette N wrote: Chel, your solution is fantastic on the dataset I submitted in my question but it is not working when I import my real dataset into R. Do I need to vectorize

Re: [R] pairing columns based on a value

2014-12-18 Thread Chel Hee Lee
dx], collapse=" ") + unlist(strsplit(comb, " ")) + }) > names(tmp) <- d0$ID > tmp $MCZ4325 [1] "C23.2" "T43.2" $GDR2343 [1] "M20.64" "Y32.1" "M20.64" "T44.2" $BZD2643 [1] "B83.2" "T43.2" "B83.2&q

Re: [R] How to make Pivot table with two variables in R?

2014-12-19 Thread Chel Hee Lee
0 Out x8 0 0 0 0 0 B 0 2015-04-07 x1 0 x2 0 x3 0 x4 0 x5 0 x6 A x7 0 x8 0 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 12/19/2014 10:45 PM, Kristi Glover wrote: Hi R User, Would you suggest me

Re: [R] How to make Pivot table with two variables in R?

2014-12-20 Thread Chel Hee Lee
You are welcome, I am glad that I was able to help. Chel Hee Lee, PhD Biostatistician and Manager Clinical Research Support Unit College of Medicine University of Saskatchewan On 12/20/2014 03:53 AM, Kristi Glover wrote: Thank you Prof. Lee for your code. I am sorry that I noticed that I sent

Re: [R] 6 regions around a point

2014-12-21 Thread Chel Hee Lee
1, labels=paste("S", 1:6, sep="_")) > points(x=2, y=4, cex=3) > Please see the output. Is this what you are looking for? I hope this helps. Chel Hee Lee On 12/21/2014 01:25 PM, eliza botto wrote: Dear UseRs, A point was plotted by the following command plot(2,4,y

Re: [R] number of individuals where X=0 during all periods (longitudinal data)

2014-12-22 Thread Chel Hee Lee
; length(x[unlist(x)]) [1] 1 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 12/22/2014 7:45 AM, najuzz wrote: #Hi guys, #I would like to count the number of individuals that receive X=0 troughout their observational period. #example dataset: ID<-c(1,1,1

[R] M logit/problems

2015-01-10 Thread Lee van Cleef
Dear R users, 1) My problem in short: Mlogit cannot calculate certain conditional models. 2) My database: The target was a logistical regression analysis and a probability function which should include generic coefficients and alternative-specific ones. The database was a survey, the d

[R] Change of locale

2015-01-11 Thread Chel Hee Lee
#x27; and 'LC_MESSAGES' in order to change messages in a given locale? However, it is questionable. Please see the following example (messages in Japanese): > Sys.setenv(LANGUAGE="ja_JP.utf8") > a エラー: オブジェクト 'a' がありません

Re: [R] Change of locale

2015-01-12 Thread Chel Hee Lee
Thank you so much. Your explanation is very clear and helpful to understand. Thank you, again. Chel Hee Lee On 1/12/2015 5:56 AM, Prof Brian Ripley wrote: You don't want to change the locale, rather the message language. That is not a locale, and e.g. LANGUAGE=en is the correct

[R] Mlogit: Error in model.frame.default/ Error in solve.default

2015-01-15 Thread Lee van Cleef
Dear R users, 1) My problem in short: Mlogit cannot calculate certain conditional models. 2) My database: The target was a logistical regression analysis and a probability function which should include generic coefficients and alternative-specific ones. The database was a survey, the dependent

Re: [R] Extracting elements out of list in list in list

2015-01-16 Thread Chel Hee Lee
This approach may not be fancy as what you are looking for. > xl <- unlist(x) > xl[grep("A", names(xl))] f1.x1.A f1.x2.A f2.x3.A f2.x4.A 11 12 13 14 > I hope this helps. Chel Hee Lee On 01/16/2015 04:40 AM, Rainer M Krug wrote: Hi Consider the fo

Re: [R] Evaluating a formula

2015-01-16 Thread Chel Hee Lee
222.247934 226.107438 230.00 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 01/16/2015 02:16 AM, philippe massicotte wrote: Hi all. How we evaluate a formula in R? Ex.: params <- list(a = 2, b = 3) x <- seq(1,10, length.out = 100) func1 <- as.formu

Re: [R] Evaluated expression in lattice key

2015-01-19 Thread Chel Hee Lee
ine(lm(y~x), col="red") panel.text(1, -1, bquote(R^2 == .(summary(lm(y~x))$r.squared))) }, grid = TRUE ) Is this what you are looking for? I hope this helps. Chel Hee Lee On 01/17/2015 07:08 AM, Naresh Gurbuxani wrote: In a conditional xyplot, I would like to add some numeri

Re: [R] add a list name into the list content in a new output

2015-01-19 Thread Chel Hee Lee
3.15 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 01/19/2015 02:14 PM, Shuhua Zhan wrote: Dear All, I'd like to add a list name into the list contents to make a new output. The list is a list of data.frame derived from summary command in Rqtl. I want to add th

Re: [R] Extracting elements out of list in list in list

2015-01-19 Thread Chel Hee Lee
32 33 34 > extr.1(x=x, name="A") f1.x1.A f1.x2.A f2.x3.A f2.x4.A 11 12 13 14 > extr.1(x=x, name="a") named numeric(0) > extr.1(x=x, name="Aha") f1.x1.Aha f1.x2.Aha f2.x3.Aha f2.x4.Aha 2122232

Re: [R] add a list name into the list content in a new output

2015-01-20 Thread Chel Hee Lee
6.75 6 heart_wt c12.loc49 12 51.2 28.2062.2 3.65 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 1/20/2015 9:23 AM, Shuhua Zhan wrote: Hi Chel, Thank you very much for your help! I'm sorry I did not post my wanted output correctly. I only want the colnames o

Re: [R] subscript out of bounds

2015-01-20 Thread Chel Hee Lee
is helps. I would appreciate if you DO READ the posting guide. Chel Hee Lee On 1/20/2015 9:30 AM, Ragia Ibrahim wrote: Hello, kindly , how to catch this Error Error in A[[i]] : subscript out of bounds and check that the list is empty is.null( A[[i]] ) do no twork thanks in advance R.I

Re: [R] Counting Words

2015-01-22 Thread Chel Hee Lee
> x <- c("hola mundo mundo"); > table(unlist(strsplit(x, " "))) hola mundo 1 2 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 1/22/2015 8:25 AM, bgnumis bgnum wrote: Hi all, I want to cout the different words in a text. You

Re: [R] sum of grouped elements of vector

2015-01-23 Thread Chel Hee Lee
7+8) > new1 [1] 3 3 15 15 > > grp.id <- c(1,1, 2, 3,3,3, 4,4) > tapply(X=a, INDEX=grp.id, FUN=sum) 1 2 3 4 3 3 15 15 > aggregate(x=a, by=list(grp.id), FUN=sum) Group.1 x 1 1 3 2 2 3 3 3 15 4 4 15 > xtabs(formula=a~grp.id) grp.id 1 2 3 4

Re: [R] get latest dates for different people in a dataset

2015-01-23 Thread Chel Hee Lee
> do.call(rbind, lapply(split(data, data$Name), function(x) x[order(x$CheckInDate),][nrow(x),])) Name CheckInDate Temp John John 2014-04-01 99.0 Mary Mary 2014-03-01 98.1 Sam Sam 2014-04-01 97.5 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 01/23/2015

Re: [R] adding an additional column for preserving uniqueness

2015-01-28 Thread Chel Hee Lee
1 > I hope this helps. Chel Hee Lee On 01/28/2015 07:38 PM, William Dunlap wrote: with(dat1, ave(integer(length(Date)), Date, FUN=seq_along)) [1] 1 1 2 1 1 2 1 2 1 2 1 Bill Dunlap TIBCO Software wdunlap tibco.com On Wed, Jan 28, 2015 at 4:54 PM, Morway, Eric wrote: The two datase

Re: [R] Paste every two columns together

2015-01-28 Thread Chel Hee Lee
(c,lapply(tapply(ID1, gl(7,2), c), paste, collapse="")) 1234567 "AA" "TG" "CT" "GC" "GT" "CG" "TA" > Is this what you are looking for? I hope this helps. Chel Hee Lee On 01/28/2015 05:5

Re: [R] Paste every two columns together

2015-01-28 Thread Chel Hee Lee
Hi Bert! yes, you are VERY correct!!! Why am I making this simple thing so complicated??? ;) Thank you so much for your nice lesson! Chel Hee Lee On 01/28/2015 09:59 PM, Bert Gunter wrote: eek! Chel Hee,anything that complicated should engender fear and trembling. Much simpler and more

Re: [R] Passing a Data Frame Name as a Variable in a Function

2015-01-29 Thread Chel Hee Lee
2 2 b 3 3 c 4 4 d 5 5 e > eval(parse(text=DFName))[,1] [1] 1 2 3 4 5 > length(eval(parse(text=DFName))[,1]) [1] 5 > Is this what you are looking for? I hope this helps. Chel Hee Lee On 1/29/2015 12:34 AM, Jeff Newmiller wrote: This approach is fraught with dangers. I reco

Re: [R] problem with conditional column sums

2015-01-29 Thread Chel Hee Lee
Or, you can also do the same job using 'colSums()' as shown in the below: > colSums(status=="I") 2010 2011 2012 344 > I hope this helps. Chel Hee Lee On 1/28/2015 7:31 PM, JSHuang wrote: Hi, I think you need quotation around I like the following: st

Re: [R] lost in plotmath expressions

2015-01-30 Thread Chel Hee Lee
Why don't try this? > nams<-c("P2O5 ['%']", "D50 [mu*m]") > pdf("test.pdf") > for(i in 1:2) + plot(1,1,xlab=parse(text=(bquote(.(nams[i]) > dev.off() Is this what you are looking for? I hope this helps. On 1/30/2015 7:54 AM, PIKAL Petr wrote: Thanks So the key is to put expression(s) dir

Re: [R] Repeat elements of character vector

2015-01-30 Thread Chel Hee Lee
> paste(rep(v1, each=3), 1:3, sep="_") [1] "a_1" "a_2" "a_3" "b_1" "b_2" "b_3" "c_1" "c_2" "c_3" > Is this what you are looking for? I hope this helps. Chel Hee Lee On 1/30/2015 7:34 AM,

Re: [R] R problem

2015-01-31 Thread Chel Hee Lee
rmat(ex, format="%A") [1] "Thursday" "Friday" > weekdays(ex) [1] "Thursday" "Friday" > Is this what you are looking for? I hope this helps. Chel Hee Lee On 1/31/2015 3:06 AM, Camilla Timo wrote: Hi there, I have a problem, i have a datase

Re: [R] pch size in a legend

2015-01-31 Thread Chel Hee Lee
"Rgui" "little" "win.binary" path.sep r_arch ";""x64" > Chel Hee Lee On 1/30/2015 9:55 PM, Jim Lemon wrote: Hi Ahmed, Hmmm, this seems to work for me (R-3.1.2, Linux) legend(0,2100, legend=c("2009","

Re: [R] quetion about matrix compute

2015-01-31 Thread Chel Hee Lee
00010 I hope this helps. Chel Hee Lee On 1/30/2015 11:52 AM, JS Huang wrote: Hi, Here is my implementation. Hope this helps. b [1] 1 2 3 4 5 c [1] 1 2 1 3 5 4 sapply(b,function(x)ifelse(x==c,1,0)) [,1] [,2] [,3] [,4] [,5] [1,]10000 [2,]

Re: [R] Rotate array by 90°

2015-02-05 Thread Chel Hee Lee
> lapply(1:2, function(x) t(A[rev(1:3),,x])) [[1]] [,1] [,2] [,3] [1,] "g" "d" "a" [2,] "h" "e" "b" [3,] "i" "f" "c" [[2]] [,1] [,2] [,3] [1,] "p" "m" "j&qu

Re: [R] How to solve this complex equation

2015-02-11 Thread Chel Hee Lee
lutions). I hope this helps. Chel Hee Lee On 2/10/2015 2:29 AM, Rolf Turner wrote: On 10/02/15 14:04, Ssuhanchen wrote: Hi! I want to use R to calculate the variable x which is in a complex equation in below: 2 Σ[exp(-x/2)*(x^k)/(2^k*k!)]=0.05 k=0 how to solve this equation to get

Re: [R] How to solve this complex equation

2015-02-11 Thread Chel Hee Lee
A~ha~!! Thank you, Prof. Peter Dalgaard, so much for your wonderful lesson!!! Learning new things everyday from this R-help mailing list! Chel Hee Lee On 2/11/2015 10:37 AM, peter dalgaard wrote: On 11 Feb 2015, at 17:11 , Chel Hee Lee wrote: The functional form given in the post

[R] evaluating spatial autocorrelation in a raster

2015-03-14 Thread Julie Lee-Yaw
Hi I am attempting to explore the scale of spatial autocorrelation in a raster (eventually across a stack of 10 but for now a single layer) and consequently in a potential sample of points across the landscape (ie. if we wanted to know what sampling design in terms of distance would minimize aut

[R] How to add a dummy code for (G)LMER

2018-11-04 Thread Yune S. Lee
Dear R experts -- I never needed to add a dummy column and always query statistical results by querying summary(model) for GLMER. However, I was recently asked to add a dummy column for interaction variables when performing GLMER. Could anyone tell me if it's necessary to add a dummy column for GL

[R] R cairo_pdf function does not respect plotting boundaries

2019-02-28 Thread Lee Steven Kelvin
: https://stackoverflow.com/questions/54892809/r-cairo-pdf-function-does-not-respect-plotting-boundaries Thank you in advance for any insights into this issue. Sincerely, Lee Kelvin -- Dr Lee Kelvin Department of Physics UC Davis One Shields Avenue Davis, CA 95616 USA Ph: +1 (530) 752-1500 Fax: +1 (530)

Re: [R] R cairo_pdf function does not respect plotting boundaries

2019-03-05 Thread Lee Steven Kelvin
do to help, please do let me know. Thank you again, Best, Lee On Monday, 4 March 2019, Paul Murrell mailto:p...@stat.auckland.ac.nz>> wrote: Hi (cc'ed to r-devel where further discussion should probably take place) Thanks Lee. I see that problem. There is a "+ 1" in

Re: [R] Is it possible to define another kind of NA

2014-11-09 Thread Lee, Chel Hee
> LDL <- NA_real_ > is.LDL <- is.na > v <- c(0.2, 0.28, LDL, 0.9) > v [1] 0.20 0.28 NA 0.90 > is.LDL(v) [1] FALSE FALSE TRUE FALSE > Hope this helps. Chel Hee Lee On 11/9/2014 12:07 PM, Marc Girondot wrote: Dear member list, In many experimental sciences, there

Re: [R] Equivalent to matlab ".*" operator in R

2014-11-19 Thread Chel Hee Lee
Another (simpler) way that I can think is that > y * matrix(rep(z,3), ncol=ncol(y), byrow=TRUE) [,1] [,2] [1,]00 [2,]6 -3 [3,] 12 -6 I hope this helps. Chel Hee Lee On 14-11-19 08:43 AM, Ruima E. wrote: > Thank you Chel Hee. > > Isn't there a sim

Re: [R] Equivalent to matlab ".*" operator in R

2014-11-19 Thread Chel Hee Lee
> y = matrix(cbind(c(0, 0.5, 1),c(0, 0.5, 1)),ncol=2) > z = matrix(c(12, -6),ncol=2) > t(apply(y, 1, function(x) x*z)) [,1] [,2] [1,]00 [2,]6 -3 [3,] 12 -6 I hope this helps. Chel Hee Lee On 14-11-19 08:22 AM, Ruima E. wrote: > Hi, > > I have this: >

Re: [R] How do I extract single entries from a factor?

2014-11-22 Thread Chel Hee Lee
> xx <- as.factor(c("AL", "AK", "CA", "FL")) > xx [1] AL AK CA FL Levels: AK AL CA FL > as.character(xx) [1] "AL" "AK" "CA" "FL" I hope this helps. Chel Hee Lee On 14-11-22 01:12 AM, Aditya Singh wrote:

Re: [R] More elegant way of stacking the data

2014-11-25 Thread Lee, Chel Hee
c3 6 4 5.c3 5 e c3 7 5 1.c4 1 a c4 4 1 2.c4 2 b c4 5 2 3.c4 3 c c4 6 3 4.c4 4 d c4 7 4 5.c4 5 e c4 8 5 I hope this helps. Chel Hee Lee On 11/24/2014 5:12 PM, Dimitri Liakhovitski wrote: I have the data frame 'df' and my desired solution 'out&#x

Re: [R] Converting list to character

2014-11-25 Thread Lee, Chel Hee
uot; 9 "GR.3.8" "GR.3.8" 10 "GR.3.7" "GR.3.7" 11 "GR.3.1" "GR.3.1" 12 "GR.3.8" "GR.3.8" 13 "GR.3.1" "GR.3.8" 15 "GR.3.8" "GR.3.8" 16 "GR.3.1" "GR.3.1" 17 &q

Re: [R] r code for mtcars data frame

2014-11-28 Thread Lee, Chel Hee
"Merc 450SLC", "Cadillac Fleetwood", "Lincoln Continental", "Chrysler Imperial", "Fiat 128", "Honda Civic", "Toyota Corolla", "Toyota Corona", "Dodge Challenger", "AMC Javelin", "Camaro Z28&

[R] strange answer when using 'aggregate()' with a formula

2016-01-20 Thread Chel Hee Lee
x))) grp y 1 2 0 2 3 0 What a surprise! Is this a bug? I would appreciate if you share the results after testing the codes. Thank you so much for your helps in advance! Chel Hee Lee __ R-help@r-project.org mailing list -- To UNSUBSCRI

Re: [R] strange answer when using 'aggregate()' with a formula

2016-01-21 Thread Chel Hee Lee
I appreciate your kind guidance! I did not read the manual carefully (it's my fault). Thank you so much, Prof. John Fox! Chel Hee Lee On 01/21/2016 12:52 AM, Fox, John wrote: Dear Chel Hee Lee, With the formula method, the default na.action is na.omit; thus, aggregate(y~grp, dat

[R] degree sign

2016-03-18 Thread Cathy Lee Gierke
quot;, sep = "")) #xl<-expression(~degree) xl <- parse(text = paste(Orthophase[i,j], "*degree ~ S", sep = "")) printXlab<-paste("Orthophase",Orthophase[i,j],xl," ") plot(MyDa

Re: [R] degree sign

2016-03-19 Thread Cathy Lee Gierke
. The variables are not evaluated: Hours from Reference Time:RefTimeStringModel span =format(magDt, 3, 2)hrs oOrthophasei° bBathyphasei° ​I don't really understand what state is required for the degrees to print....​ Cathy Lee Gierke *"We are what we repeatedly do. Excellence, then, is not

[R] error: optim(rho, n2ll.rho, method = method, control = control, beta = parm$beta, : initial value in 'vmmin' is not finite

2009-07-09 Thread Brandy Lee Aven
I am trying to use the lnam autocorrelation model from the SNA package. I have it running for smaller adjacency matrices (<1,500) it works just fine but when my matrices are bigger 4000+. I get the error: > lnam1_01.adj<- lnam(data01$adopt,x01,ec2001.csr) Error in optim(rho, n2ll.rho, method =

[R] One critical question in R

2009-08-04 Thread Hyo Karen Lee
Hi, I have one critical question in using R. I am currently working on some research which involves huge amounts of data(it is about 15GB). I am trying to use R in this research rather than using SAS or STATA. (The company where I am working right now, is trying to switch SAS/STATA to R) As far as

[R] acf and ccf

2013-07-30 Thread Cathy Lee Gierke
S*. Fourth Edition. Springer-Verlag. Sincere thanks, Cathy Lee Gierke [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R

[R] Fitting a predefined classification tree

2012-12-19 Thread Lee Frederick Schroeder
to fit for the optimal splitting criteria at each of the predefined nodes. Does such a package exist? Thanks, Lee __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-proj

[R] RPART: Including the expense of predictor variables

2013-01-10 Thread Lee Frederick Schroeder
to weight the predictor variables such that rpart will not use an expensive variable (or will only send limited fractions of the population to the node) if there is not a comparatively large decrease in misclassifications after splitting by that variable? Thanks, Lee

[R] help with calculation from dataframe with multiple entries per sample

2012-09-17 Thread Julie Lee-Yaw
Hi  I have a dataframe similar to: >Sample<-c(1,1,1,2,2,2,3,3,3) >Time<-c(1,2,3,1,2,3,1,2,3) >Mass<-c(3,3.1,3.4,4,4.3,4.4,3,3.2,3.5) >mydata<-as.data.frame(cbind(Sample,Time,Mass))   Sample Time Mass 1      1    1  3.0 2      1    2  3.1 3      1    3  3.4 4      2    1  4.0 5      2    2  4

[R] Problem with R script

2012-09-24 Thread Woo Back Lee
To whom I concern, I am a recent user of program R I do not know how to explain this but after I installed the program the words on the scrpit does R console does not appear clear but something square(?)/Cube(?) which seems like the words are broken More suprisingly, the squared words are writte

[R] lme help configuring random effects

2012-10-01 Thread Julie Lee-Yaw
Hi Everyone,  Sorry to ask what I think is a basic question but I really haven't found my answer yet in the archives.  I am trying to run a mixed effects model in R using the lme package. My experiment is such that I am interested in the effects of Temperature (2 levels) and Species (3 levels)

[R] building a package

2014-02-10 Thread Cathy Lee Gierke
want incorporated into the package for possible use by users, as well. When I put them in the data folder, I get errors, and they get converted somehow What is the proper way to put these data files into the package? Thanks for your help, Cathy Lee Gierke "Our lives begin to end the day we bec

Re: [R] problem to building R (datasets)

2010-06-23 Thread Geun Seop Lee
"$(pkg)\", compress=3)" | \ >>R_DEFAULT_PACKAGES=NULL LC_ALL=C $(R_EXE) > /dev/null >> at the Makefile.win in the src/datasets directory >> I am using Window XP and tried to compile 2.11.1 version. >> >> I can'

[R] problem to building R (datasets)

2010-06-23 Thread Geun Seop Lee
am using Window XP and tried to compile 2.11.1 version. I can't imagine how I can solve this problem. Any hints or suggestions will be appreciated. Thank you. Lee. [[alternative HTML version deleted]] __ R-help@r-project.org mailing

Re: [R] problem to building R (datasets)

2010-06-23 Thread Geun Seop Lee
fined reference to `_Unwind_SjLj_Register' undefined reference to `_Unwind_SjLj_Unregister' These link errors were happened even after I installed R 2.11.1 and use Makefile.win I will really appreciate if you can give me a hint to solve that problems... Thank you again. Lee. On Wed, Jun 2

Re: [R] problem to building R (datasets)

2010-06-24 Thread Geun Seop Lee
Thank you. I finally found what was the problem. By mistake, I compiled with different version of MinGW compiler. I heard that new MinGw compiler does not support _Unwind_ kinds of functions anymore. Thank you again. Lee. On Wed, Jun 23, 2010 at 7:30 PM, Geun Seop Lee wrote: > Thank

[R] fatal error: unable to restore saved data

2010-06-25 Thread Albert Lee, Ph.D.
I just installed the R 2.11.1 version on my computer and I encountered a fatal error: "Unable to restore saved data in .RData" and kick me out of R right away. I still can run 2.10.2. There is no package called "rattle" I checked various posts regarding this error. I still can't get it to wo

[R] become a member of R user community

2010-06-26 Thread Albert Lee, Ph.D.
How do I become a member of R user community? Albert Lee, Ph.D. statistician Confidentiality Notice: This communication, and any file...{{dropped:12}} __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] Lasso for k-subset regression

2011-06-05 Thread Dae-Jin Lee
Dear R-users I'm trying to use lasso in lars package for subset regression, I have a large matrix of size 1000x100 and my aim is to select a subset k of the 100 variables. Is there any way in lars to fix the number k (i.e. to select the best 10 variables) library(lars) aa=lars(X,Y,type="lasso"

[R] Help!!! from R beginner

2011-02-04 Thread Tae-Jin Lee
Hello, I'm trying to add a column to the following data frame. The new column will contain "black" when the 5th column(if_TE_related) is "TE_related", or "orange" when the 4th column is " " (space). "chromo""MSU_locus" "end5" "end3" "if_TE_related" "chr04" "LOC_Os04g01006"

[R] Fwd: Help!!! from R beginner

2011-02-04 Thread Tae-Jin Lee
Sorry. I made a typo. It is the 5th column (not 4th). Thank you. Tae-Jin Begin forwarded message: > From: Tae-Jin Lee > Date: February 4, 2011 7:09:38 PM EST > To: r-help@R-project.org > Subject: Help!!! from R beginner > > Hello, > > I'm trying to add a column to

Re: [R] Help!!! from R beginner

2011-02-05 Thread Tae-Jin Lee
E_related", "black", "orange") On Fri, Feb 4, 2011 at 7:09 PM, Tae-Jin Lee wrote: Hello, I'm trying to add a column to the following data frame. The new column will contain "black" when the 5th column(if_TE_related) is "TE_related", or &quo

[R] length of variable in mlogit

2012-07-30 Thread Lee van Cleef
Dear all, does anybody have experience with building logits in Mlogit? I want to test the use of a couple of alternative specific variables with a generic regression coefficient. However, one of them simply does not work. R says the length of this variable is different. Problem: If I check the l

[R] Marginal effects in mlogit

2012-07-30 Thread Lee van Cleef
Dear all, does anybody have experience with the calculation of marginal effects (“effects”) in Mlogit (see Croissant, Package ‘mlogit’, p.8)? 1) Is there a good qualitative explanation available for the listed options for the argument “type” (“aa”, …)? When do I have to choose aa, ar…? And w

Re: [R] length of variable in mlogit

2012-08-01 Thread Lee van Cleef
Ingmar, many thanks. I get that one from R: Error in model.frame.default(terms(formula, lhs = lhs, rhs = rhs, data = data), : variable lengths differ (found for 'X') X is the variable I have used. Any comment would be much appreciated. Best regards! -- View this message in context: ht

Re: [R] length of variable in mlogit

2012-08-03 Thread Lee van Cleef
Ingmar, many thanks for your answer. I give you a smaller version of my program with the isolated "strange" variable, which I used when trying to elaborate the problem . [Start of R-Editor quote] library(foreign) library(gdata) library(gtools) library(gmodels) library(gplots) library(xtable) li

Re: [R] length of variable in mlogit

2012-08-03 Thread Lee van Cleef
Hi Michael, many thanks for your comment. Below the original data as imported from Stata format. I deleted some columns with explaining variables because they were unnecessary and working; the model has several explaining variables with generic regression coefficients. pid Choice V7.Ch 1

Re: [R] length of variable in mlogit

2012-08-10 Thread Lee van Cleef
Hi Michael, I have sent youi the data. Best, Lee -- View this message in context: http://r.789695.n4.nabble.com/length-of-variable-in-mlogit-tp4638323p4639873.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org

Re: [R] length of variable in mlogit

2012-08-14 Thread Lee van Cleef
iable with a generic coefficient (and which is working fine) is 8,436. Any comment or hint (also on literature, in case my mistakes are too simple and obvious) would be helpful. Best regards, Lee -- View this message in context: http://r.789695.n4.nabble.com/length-of-variable-in-mlogit-tp4638323p46

Re: [R] length of variable in mlogit

2012-08-14 Thread Lee van Cleef
Hi Michael, many thanks for the useful hints which gave me some deeper knowledge of R. It is definitely much appreciated. I think I have found the mistake - the problems did not arise from variable definitions etc. It was an intellectual mistake. The cause for the problems was that I had to di

[R] Drawing a simplex

2012-08-25 Thread Chel Hee Lee
I will very appreciate if anyone can provide some materials to draw a simplex plot of a Dirichlet distribution in R as shown in the page at http://en.wikipedia.org/wiki/File:Dirichlet_distributions.png . __ R-help@r-project.org mailing list https://stat.

Re: [R] Drawing a simplex

2012-08-27 Thread Chel Hee Lee
Thank you, David. I found some good stuffs for which I have been looking. On Sun, 2012-08-26 at 09:01 -0700, David Winsemius wrote: > On Aug 25, 2012, at 9:00 PM, Chel Hee Lee wrote: > > > I will very appreciate if anyone can provide some materials to draw a > > simplex p

[R] Computing 'exp(1e3)*0' correctly....

2012-09-01 Thread CHEL HEE LEE
I have some trouble to deal the value of 'NaN'. For example, > exp(1e3) [1] Inf > exp(1e3)*0 [1] NaN The correct answer should be 0 rather than NaN. I will very appreciate if anyone can share some technique to get a correct answer. __ R-help@r-proje

Re: [R] Computing 'exp(1e3)*0' correctly....

2012-09-02 Thread CHEL HEE LEE
#. Live Go... > >Live: OO#.. Dead: OO#.. Playing > > Research Engineer (Solar/BatteriesO.O#. #.O#. with > > /Software/Embedded Controllers) .OO#. .OO#. rocks...1k > > --------

[R] optim with simulated annealing SANN for combinatorial optimization

2011-12-15 Thread Dae-Jin Lee
Hi all I am trying to solve a combinatorial optimization problem. Basically, I can reduce my problem into the next problem: 1.- Given a NxN grid of points, with some values in each cell 2.- Find the combination of K points on the grid such that, the maximum mean value is obtained I took the Tr

[R] R to automate scatter plots

2011-11-09 Thread Cynthia Lee Page
Hi R people! I have a directory of .csv files I would like to make into objects then scatter plots. I have been having varying degrees of progress. I was able make an object of all files, loop through it, and make a pdf of the last file I looped through. I kept renaming the pdf so instead o

[R] reproducible sample() in mclapply

2012-03-13 Thread Lik Wee Lee
Hi, Using the multicore package and calling sample() in mclapply, how do I get the results to be reproducible? I know the random number is seeded by process id and so is different for each run. Thanks, Lik [[alternative HTML version deleted]]

[R] General question on the message with "non zero exit status"

2012-04-12 Thread Chel Hee Lee
I have a general question how to understand the message with "non-zero exit status" when new package is installed. Based on my experience, this message implies a package dependence. Am I correct to understand this message? Are there anyone who can provide some reference or explain details about the

[R] Latent class model with Polytomous Variable and Bootstrap

2012-01-13 Thread Kuen Bok lee
Hi. I run a latent class analysis with polymotous variables. Because of small sample size, I have to use bootstrap method in order to select a proper model. Is there any package or way that I can run a bootstrap method after runing latent class model with polytomous variables? Thank KeunBok Lee

Re: [R] General question on the message with non zero exit status

2012-04-18 Thread Chel Hee Lee
Oh... I see!!! I very appreciate for your clear explanation! Thank you, Uwe Ligges. -- View this message in context: http://r.789695.n4.nabble.com/General-question-on-the-message-with-non-zero-exit-status-tp4551438p4568839.html Sent from the R help mailing list archive at Nabble.com. _

[R] problem pasting into Illustrator CS2

2008-06-04 Thread Courtney Lee Meier
To Whom it May Concern: I have been using R version 2.6.2 for awhile now, installed on a PowerMac G5 running OS 10.4.11 I typically get Quartz graphics output from R into Adobe Illustrator CS2 simply by copying and pasting. Upon upgrading to R version 2.7.0, I now receive an error from Ill

Re: [R] Problems with lm()

2008-06-20 Thread Hsin-Ya Lee
gt;> print(lm3) >> anova(lm3) >> >> When I use lm to fit the data, there are some problems >> in ??subject*sequence??. I have use GLM in SPSS to >> fit the same data, and it seems there is no problem. >> >> I don??t know where my problem is. How can

Re: [R] Problems with lm()

2008-07-01 Thread Hsin-Ya Lee
Dear Dr. Dalgaard Sorry for delay reply.. That's exactly what I was looking for - thanks a lot. Hsin-Ya Peter Dalgaard wrote: > > > > Andrew Robinson wrote: >> In your data, subject is nested within sequence. Was that your >> intention? >> >> > Presumably yes. This looks like a standar

Re: [R] how to find and use specific column after spliting dataframe

2007-11-28 Thread Hsin-Ya Lee
=x, formulation=y, subject=z, time=t, concentration=c) A.split<-split(df, list(df$pH ,df$formulation, df$subject) ) A.split [] Best regards, Hsin-Ya Lee Henrique Dallazuanna wrote: > > Try this: > > A.split[[1]]["time"] > A.split[[1]][["concentration"

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