[R] kernlab's ksvm method freeze

2009-11-29 Thread Heiko Strathmann
mple code to reproduce: http://www-stud.uni-due.de/~sfhestra/ I am using R version 2.10.0 and kernlab 0.9-9. Thanks for your help! Regards, Heiko Strathmann __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] kernlab's ksvm method freeze

2009-11-29 Thread Heiko Strathmann
email) http://www-stud.uni-due.de/~sfhestra/ In my eyes this behavior is really strange, and i have no clue, what to do to solve this. Regards, Heiko Strathmann Am Sonntag, den 29.11.2009, 14:21 +0100 schrieb Heiko Strathmann: > Hello, > > I am using kernlab to do some binary classifi

Re: [R] kernlab's ksvm method freeze

2009-11-29 Thread Heiko Strathmann
C=2) > > several times on both workspaces and both returned some results after a > couple of seconds under the same versions (R version 2.10.0 and kernlab > 0.9-9.) under Windows XP. > > There mist be something else going on... > > Best wishes, > Uwe Ligg

Re: [R] kernlab's ksvm method freeze

2009-11-29 Thread Heiko Strathmann
ot;freeze_workspace.RDATA") replicate(10, ksvm(kernel="matrix", kernelMatrix, trainingDataYs, type="C-svc", C=2, cross=10)) gets me a frozen R process, CTRL-C does not work anymore, and the only thing left is to kill it. (for cross < 4, the thing still works) (I also jus

Re: [R] kernlab's ksvm method freeze

2009-11-30 Thread Heiko Strathmann
dows and > Linux. > > Please report your findings to the package maintainer who might be able to > debug this under Linux (probably easier than under Windows). > > Best, > > Uwe Ligges > > > > > > > Heiko Strathmann wrote: > >> I tried out the code yo

Re: [R] kernlab's ksvm method freeze

2009-11-30 Thread Heiko Strathmann
Hello again, i got this message from the maintainer: Am Montag, den 30.11.2009, 11:22 +0100 schrieb Heiko Strathmann: > Ok, i reported it. > thanks for trying it out again. > > Am 30. November 2009 11:06 schrieb Uwe Ligges > : > My apologies, that must have been a co

Re: [R] kernlab's ksvm method freeze

2009-11-30 Thread Heiko Strathmann
the diagonal of your kernelMatrix thus making sure that all sampled kernelMatrices are positive semidefinite i.e. diag(kernelMatrix) <- diag(kernelMatrix) + 0.05 seems to do the trick for me. regards Alexandros Am Montag, den 30.11.2009, 11:22 +0100 schrieb Heiko Strathmann: > Ok, i repor

Re: [R] kernlab's ksvm method freeze

2009-12-01 Thread Heiko Strathmann
not a R-workspace, but my zipped working directory. The file I run is parameterSearch.R. The freeze happens more or less late in the search, but not at a fixed point. Heiko Am Dienstag, den 01.12.2009, 10:25 +0100 schrieb Uwe Ligges: > > Heiko Strathmann wrote: > > Hello again, &g

[R] Problems while plotting with ROCR

2009-12-04 Thread Heiko Strathmann
Hello all, I have two problems with the ROCR package. First Problem: the add=TRUE option does not work for plotting performance objects The following code is taken from the reference manual (example for ROCR.hiv, page2) data(ROCR.hiv) attach(ROCR.hiv) pred.svm <- prediction(hiv.svm$predictions,

Re: [R] kernlab's ksvm method freeze

2011-12-21 Thread Heiko Strathmann
working well for most of the other freeze problems. > > Wuming > > > On Tue, Dec 1, 2009 at 5:46 AM, Heiko Strathmann > wrote: >> Sorry i forget to paste it. >> But it should be there in another mail. >> >> Also, the suggested trick fixes the problem i