Re: [R] Transferring results from R to MS Word2

Tom: Supposse your Excel file is named "myExcelFile" Open myExcelFile and SaveAs "myExcelFile.csv" or "myExcelFile.txt" Then go to the RConsole and type: #Option # 1 mydata <- read.csv("PathTomyExcelFile.csv",header=T) mydata # You should be able to see your dataset in R # Option # 2 # If you s

[R] ggplot2 Xlim

Hi: I need some help. I am ploting a bar graph but I can't adjust my x axis scale I use this code: i <- qplot(ForkLength,Number,data=FL,geom="bar") i + geom_bar(colour="blue",fill="grey65") # too crowded FL_dat <- ggplot(FL,aes(x=ForkLength,y=Number)) + geom_bar(colour="green",f

Re: [R] ggplot2 Xlim

If you do end up using geom="bar", I believe the > mistake you're making -- > and I see an error message when I try -- is that you are > using > scale_x_continuous whereas the X axis is discrete, so you > should be using > scale_x_discrete. But then it will ta

Re: [R] ggplot2 Xlim

gt; Date: Friday, December 26, 2008, 3:31 PM > Hi Felipe, > > It sounds like ForkLength is a factor - what deos str(FL) > tell you? > You might also need geom_bar(..., stat = > "identity") since your data > are pretabulated. > > Hadley > > On Fri, Dec 26

[R] finding yap.exe with Sweave

Dear all: Just to make sure I am on the same page as everyone else. I just got a new computer and had to reinstall MikTex and of course R and Tinn-R. In order to be able to generate PDF's with Sweave I had to install notepad++ to tell Sweave where Latex.exe and yap.exe where located under MikTe

Re: [R] finding yap.exe with Sweave

NY 13790 > cryanatbinghamtondotedu > PGP public keys available at > http://home.stny.rr.com/ryancw/ > > "If you want to build a ship, don't drum up the > men to gather wood, > divide the work and give orders. Instead, teach them to > yearn for the > vast and en

Re: [R] finding yap.exe with Sweave

reates one. --- On Wed, 12/31/08, Felipe Carrillo wrote: > From: Felipe Carrillo > Subject: Re: [R] finding yap.exe with Sweave > To: r-h...@stat.math.ethz.ch, "Christopher W. Ryan" > Date: Wednesday, December 31, 2008, 3:57 PM > This is what I did: > Installed R,Tinn-R

[R] xtable-longtable question

Hello: I am using Sweave to generate a PDF with figures and tables and was wondering if is possible to carry on table headers and some kind of caption like 'Continued' to the next PDF page when creating long tables. Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior

Re: [R] xtable-longtable question

Thanks Duncan, I'll try that with my data. --- On Wed, 1/7/09, Duncan Mackay wrote: > From: Duncan Mackay > Subject: Re: [R] xtable-longtable question > To: mazatlanmex...@yahoo.com > Cc: r-help@r-project.org > Date: Wednesday, January 7, 2009, 1:15 PM > I use Sweave and longtable but have not

[R] longtable example

Hi: Could someone try to run this example? I can't make it work. ## Not run: \begin{small} \setlongtables \begin{longtable}{ <>= cat(paste(c('c', rep('cc', 34/2-1), 'c'), collapse='@{\hspace{2pt}}')) @ } \hline \endhead \hline \endfoot <>= library(xtable) set.seed(2345) res <- matr

[R] help

Hi: I am going through some of the xtable examples and I can't make the one below work. I need to create a longtable on the fly keeping the column headers for all the pages and I thought this example could give some ideas on how to do it. I am using Sweave and xtable to create my tables and gra

Re: [R] longtable example

Menne > Subject: Re: [R] longtable example > To: r-h...@stat.math.ethz.ch > Date: Thursday, January 8, 2009, 11:32 PM > Felipe Carrillo yahoo.com> > writes: > > > > > Could someone try to run this example? I can't > make it work. > > It would be be

Re: [R] longtable example

rom: Dieter Menne > Subject: Re: [R] longtable example > To: r-help@r-project.org > Date: Friday, January 9, 2009, 10:01 AM > Felipe Carrillo wrote: > > > > This is what I got. > > > > \documentclass[11pt]{article} > > \usepackage{longtable,lscape} >

[R] Hmisc-xtable label

Dear all: Does anybody know about label conflicts between xtable and Hmisc? I found a couple of e-mails similar to this problem but is not clear to me how to get around the label problem. The first table(longtable below) is generated with the latex function from Hmisc but for some reason when I

Re: [R] Hmisc-xtable label (Solved)

As soon as I sent the e-mail I found a solution to the hyperlink problem. I removed the squared brackets and the number 1 from the line below. I don't know why I had the number there in the first place. \pdfbookmark[1]{Contents}{table} --- On Sat, 1/10/09, Felipe Carrillo wrote: > From

[R] merge table rows (\multirow)

Hi: I need help merging rows. I am trying to merge the 'Month' column using \multirow. For example for the column 'Week' I want July to be merged into one row(weeks 27,28,29,30) and so on for the following weeks. Below, I am creating a PDF using Sweave, MikTex,R-2.8.1 and windows XP to show an e

[R] merge table rows (\multirow)

e: > From: Dieter Menne > Subject: Re: [R] merge table rows (\multirow) > To: r-h...@stat.math.ethz.ch > Date: Monday, January 12, 2009, 12:41 AM > Felipe Carrillo yahoo.com> > writes: > > > I need help merging rows. > > I am trying to merge the 'M

Re: [R] merge table rows (\multirow)

onday, January 12, 2009, 8:32 AM > Felipe Carrillo wrote: > > > > I am trying to merge the 'Month' column using > \multirow. For example for > > the column 'Week' I want July to be merged > into one row(weeks 27,28,29,30) > > and so on for the fo

[R] ftable to latex

Dear List: After reading some of the e-mails related to this topic I found one that converts a ftable to latex nicely. library(Hmisc) n=500 sex <- factor(sample(c("m","f"), n, rep=TRUE)) treatment <- factor(sample(c("Drug","Placebo"), n, rep=TRUE)) symptom <- factor(sample( c('H','S','G'), n

[R] seq()

HI: Could someone help me with the seq function? I have a range of values starting from 1 to 52 but I want seq to start at 27 by=2, but when it reaches 51 start with with number 1 to 25. is this possible. I can do the basics of seq() but I can't figure how to do this one. This is how I want my s

Re: [R] seq()

; > > x <- seq(1, 52, 2) > > x > [1] 1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 33 35 > 37 39 41 43 > 45 47 49 51 > > (x + 26) %% 52 > [1] 27 29 31 33 35 37 39 41 43 45 47 49 51 1 3 5 7 9 > 11 13 15 17 > 19 21 23 25 > > > > > On

[R] ggplot seq

Hi Hadley: Not sure if you received my email, so I am resending it again. I have dealt with this before and I can't remember how it got resolved. It is too much data to reproduce the example below(49.000 records) but all I am after is trying to get the x axis breaks. I want my x axis to go from 2

[R] ggplot2 example

I need to plot two graphics just like the example below but for some reason your example crashes. Using facet_wrap seems to be the cause: library(ggplot2) upper <- with(economics, data.frame(date,value = psavert, position = "upper")) upper lower <- with(economics, data.frame(date,value = unemplo

Re: [R] ggplot seq

Thanks Thierry: The use of levels is what I needed, thanks for your help. From: ONKELINX, Thierry Subject: RE: [R] ggplot seq To: mazatlanmex...@yahoo.com, r-h...@stat.math.ethz.ch Date: Friday, January 23, 2009, 3:01 AM Dear Felipe, Provide a dummy sample if your dataset is big or

Re: [R] Is it possible for R to import a SigmaPlot file?

Check the package 'foreign'. It can read data from SPSS,Minitab,SAS,Systat (sigmaplot is part of Systat) etc. I also use Sigmaplot and an easy workaround is to convert the sigmaplot file to csv or xls file and then read it into R. Felipe D. Carrillo Supervisory Fishery Biologist Department o

Re: [R] ggplot seq

Actually 'levels' works OK by ordering the x axis labels but since I have 52 weeks it gets too crowded. Here's part of my dataset with a reproducible example. sampDat <- "Week FryPassage 27 665 28 2232 29 9241 30 28464 31 41049 32 82216 33 230411 34 358541 35 747839 36 459682 37 609567 38 979475

Re: [R] ggplot seq

Dear Thierry: Thanks for the factor/level advice. I was actually reading about it last night and playing further with my data I was able to make it work with the code below: options(scipen=3) bargraph <- qplot(factor(Week,levels=c(27:52,1:26)),FryPassage, data=WFBar,geom="bar",fill=I("grey65"),c

Re: [R] Adding vertical line to histogram and qplot "stacked" plot

Jason: Check Hadley's page, there's a few examples there. Good luck http://had.co.nz/ggplot2/geom_vline.html Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service California, USA --- On Thu, 1/29/09, Jason Rupert wrote: > From: Jason Ru

Re: [R] Upgrading to TINN - R 2.1.1.6

Hi Steve: I upgraded to the same Tinn-R version a few days ago and I didn't have any problems at all. Just follow the link below for the instructions. Good luck http://sourceforge.net/forum/forum.php?forum_id=864071 Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior

Re: [R] Boxplots by variable

Hi Vemuri: is this what you want? x <- "oSO4 oNO3 mSO4 mNO3 3.3728 0.2110 1.9517421 1.01883602 0.8249 0.0697 1.5970292 0.11368781 0.2636 0.1004 0.6012445 0.24356332 8.0072 0.3443 6.1016998 3.63207149 13.5079 0.6593 12.4011068 1.55323386 6.1293 0.1989 5.7620926 0.12884845 0.6004

Re: [R] ggplot: problem with fill option in stat_smooth()

Ian: It would work if you copy it as a bitmap. Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service California, USA --- On Wed, 2/4/09, Ian Fiske wrote: > From: Ian Fiske > Subject: [R] ggplot: problem with fill option in stat_smooth(

Re: [R] Upgrading to TINN - R 2.1.1.6

ats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.8 > > Warning message: > > packages ‘TinnR’, ‘svSocket’ are not > available > > Error in library(TinnR) : there is no package called > > 'TinnR' > > > > > > > > > You suggested that I make sure that th

[R] Sweave and \Sexpr{}

Hi: I am trying to create a dynamic latex table using \Sexpr{} but it's not evaluating it. I also tried the example below without Sweave and also fails. I have also copied the Sweave.sty to my working directory but nothing seems to work. Do I need to have certain package in order to run \Sexpr{

Re: [R] Sweave and \Sexpr{}

18 > > You likely have R2HTML loaded (likely because you are using > Tinn-R) and that > causes some difficulties for Sweave that are easily solved > as described in > the FAQ. > > > > Felipe Carrillo wrote: > > > > Hi: > > I am trying to creat

[R] format \Sexpr{}

Hi everyone: It is probably something simple but I can't find anything related to this. Could someone show me how to format the sum of x. the result is 1 but I need comma formatted like this: 10,000. Since I am going to be using this number to be added to another calculation, I want to be ab

Re: [R] format \Sexpr{}

te: Friday, February 6, 2009, 12:39 PM > on 02/06/2009 02:32 PM Felipe Carrillo wrote: > > Hi everyone: It is probably something simple but I > can't find > > anything related to this. Could someone show me how to > format the sum > > of x. the result is 1 but I n

[R] function question

Hi everyone: I did this before with R and I can't remember how. I got some fish forklength values FL number 344 353 367 I need to breakdown the FL by the number of fish with the same length like this: 34 1 34 1 34 1 34 1 35 1 35 1 35 1 36 1 36 1 36 1 36 1 36 1 36 1 36 1

[R] ggplot2 Y axis labels

Hi all: Using the example below, is there a way to add Y axis titles to each graphic instead of sharing the same title? library(ggplot2) RT = matrix(c(814, 500, 424, 394, 967, 574, 472, 446),4,2) colnames(RT) = c('repetition','alternation') rownames(RT) = c('7-yrs','11-yrs','15-yrs','21-yrs') r

Re: [R] Putting frame around single panels in ggplot 2 and facet_grid()

What about using geom_vline and geom_hline to draw borders. I just couldn't find the way to set the intercept max value for geom_vline and hardcoded it to 5.5 d<- ggplot(mtcars, aes(x=mpg, y=wt)) + geom_point() + facet_grid(. ~ cyl)+ scale_y_continuous(limits=c(0,NA))+ scale_x_continuous(limits=

Re: [R] adding the mean and standard deviation to boxplots

Tom: You can do this with ggplot2. The code below puts 95% CI,a smooth line and the mean(blue point)on the same plot. Felipe library(ggplot2) r <- ggplot(ToothGrowth, aes(y=len, x=factor(dose))) r$background.fill = "cornsilk" r + geom_boxplot(aes(colour=supp)) + stat_summary(aes(group=supp)

[R] How to estimate weekly Variance

Dear All: Using the Excel formula below I am able to estimate daily variance(Daily VarPD)for PD,but I can't figure out how to estimate the Weekly variance for PD. Any hints? Daily VarPD = (PD * (1 - TD))/TD + VarTD * ((PD*(1-TD)+ PD^2*TD))/TD^3 WK TDVARTD PD Daily Var

[R] Bootstrapping data with a regression model

Hello all: Just wondering if I can get advice on what kind of bootstrapping I should use when using a regression model to estimate juvenile fish passage data. I use rotary screw traps to do fish mark-recapture trials and the efficiency of every trial is added to the graph generating a different R-s

[R] How to hold a value(Mean sq) with a string

Hi all: Can someone advice me on how to hold the residuals Mean sq value on a string so it can be used in other calculations. I was trying something like this: Msquare<-dfr$Mean sq but fails..Thanks dfr <- read.table(textConnection("percentQ Efficiency 1.5650.0125 1.94 0.0213 0.

[R] How to Estimate Covariance by Week based on a linear regression model

Hi all: I have always used SPSS to estimate weekly covariance based on a linear regression model but have to hard code the model Std. Error and the Mean-Square and then execute one week a the time. I was wondering if someone could give me an idea on how to estimate weekly(WK) covariance usi

[R] transpose dataset

Hi all: How can I transpose this dataset from column to row idweek value 1 5 51 2 6 73 3 7 41 4 8 22 5 9 83 6 10 55 7 11 42 to something like this... id1 2 3 4 5 6 7 week 5 6 7 8 9 10 11 value 51 73 41

[R] How to loop through all the columns in dataframe

Hi: Can anyone advice me on how to loop and perform a calculation through all the columns. here's my data xd<- c(2.2024,2.4216,1.4672,1.4817,1.4957,1.4431,1.5676) pd<- c(0.017046,0.018504,0.012157,0.012253,0.012348,0.011997,0.012825) td<- c(160524,163565,143973,111956,89677,95269,81558) mydf<-data

Re: [R] How to loop through all the columns in dataframe

--- jim holtman <[EMAIL PROTECTED]> wrote: > Glad I could help. You might want to post it back > to R-Help so that > others can see what was done. > > On Sun, Mar 16, 2008 at 6:02 PM, Felipe Carrillo > <[EMAIL PROTECTED]> wrote: > > Jim: I owe you man,

[R] does qplot works with Sweave?

Hi Hadley: I'm practicing writing a document using MikTex but can't make qplot to execute. It works when using 'plot' though. Is this a normal behaviour? \documentclass[9pt]{article} \title{ggplot2 example} \begin{document} \maketitle \section*{Examples of using ggplot2} The goal is to be ab

[R] Sweave: side by side dynamic graphs

Hi all: I'm trying to create some side by side dynamic graphics on the same page but I am running into some problems. I am able to create side by side figures only if I import them into my PDF. see the example bellow: \documentclass[12pt]{article} \usepackage{color,cite,graphicx}% to put in axod

Re: [R] Sweave: side by side dynamic graphs

Thanks Dieter, I didn't know about 'minipage' but I was actually going to try par'(mfrow=c(1,2))' this morning. Thanks for your help again. --- On Sun, 11/2/08, Dieter Menne <[EMAIL PROTECTED]> wrote: > > I'm trying to create some side by side dynamic > graphics on the same page but > > Than

Re: [R] getting "small" graphs with Sweave using Rnews.sty

\setkeys{Gin}{width=8} gets the desired width but shifts the graph to the right. Is there another latex command to place the graph so that the margins on left and right of the page are the same? \centering or \begin{center} doesn't seem to get it right. I have about one inch margin to my right

[R] Sweave: How to load available colors from pkg 'color'

Hi: Is there a shorter way to color the abstract,sections subsections and page headings of a document. I am using the code below in my preamble to accomplish some of it: [EMAIL PROTECTED],dvips]{color} \else\usepackage[usenames,dvipsnames]{color} % and fix pdf colour problems \IfFileExists{pdfco

[R] Sweave:How to load available colors from pkg 'color'--(Resolved)

Hello: I found a solution to my problem here, I just downloaded mystyle.sty to the same directory where my latex file resides. Then I included \usepackage{mystyle} in my preamble and that took care of coloring any section of the document. http://www.sci.usq.edu.au/staff/robertsa/LaTeX/ltxfloats.

Re: [R] multiple plots in R

Here's one way with ggplot2 library(ggplot2) p <- qplot(mpg, wt, data=mtcars) vplayout <- function(x, y) viewport(layout.pos.row=x, layout.pos.col=y) grid.newpage() pushViewport(viewport(layout=grid.layout(3,3))) print(p, vp=vplayout(1,1)) print(p, vp=vplayout(1,2)) print(p, vp=vplayout(1,3)) prin

[R] Count days of current year

Hi: Is there a function that counts the number of days of any given or current year based on the date? Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service California, USA __ R-help@r-project.

[R] hide or minimize graphics

Hello all: Is there a way to create a graph and then hide it or just make a graph in the background (invisible). Thanks Felipe D. Carrillo Fishery Biologist US Fish & Wildlife Service Red Bluff, California 96080 __ R-help@r-project.org mailing li

[R] Time series axis breaks

I hope this is the appropriate list for this type of question Consider the dataset below:I have a column DOC with values from 3 to 101and those are the values that I want to show on my x axis, howeverI only get 3, 3.1, 3.2 and so on. I tried to change those values with xlim(3, 101) but I getthe

[R] time series x axis labels

I hope this is the appropriate list for this type of question Consider the dataset below:I have a column DOC with values from 3 to 101and those are the values that I want to show on my x axis, howeverI only get 3, 3.1, 3.2 and so on. I tried to change those values with xlim(3, 101) but I getthe

[R] gridExtra-arrangeGrob

 Hi;The code below used to work on my older version of gridExtra but doesn't work with the new version. Could someonegive me a hint on how to translate this code to the new version of gridExtra code? Thank you beforehand. p1 <- ggplot(iris,aes(Sepal.Length,  Petal.Length, colour=Species)) + geom_

Re: [R] gridExtra-arrangeGrob

gt;    On Monday, January 9, 2017 1:08 AM, Felipe Carrillo via R-help > wrote: > > >  Hi;The code below used to work on my older version of gridExtra but doesn't >work with the new version. Could someonegive me a hint on how to translate >this code to the new version

Re: [R] Legend position in ggplot

Like this? theme(legend.position= 'top' On Thursday, June 17, 2021, 10:52:04 AM PDT, peri He wrote: Dear Friends, I would like to see my legend outside of a ggplot (at the top). This code is showing the legend inside of a plot: theme(legend.position=c(0.15,0.97)) But when I changed

[R] Preserving numeric columns

Consider the following dataset:  I need to replace NAs with "-" but I lose my numeric formatting  fall.estimate <- structure(list(`Salmon` = c("salmon River", "Ant Creek", "big Creek", "oso River", "linda Creek"), `baseline` = c(80874.384012, 361.1997, 5012.8311, 638.6912, 402.1044), `ta

Re: [R] Preserving numeric columns

nvert everything to character format intentionally then. On October 19, 2019 12:44:26 AM PDT, Felipe Carrillo via R-help wrote: >Consider the following dataset:  I need to replace NAs with "-" but I >lose my numeric formatting  fall.estimate <- structure(list(`Salmon` = >c("

Re: [R] Preserving numeric columns

is for you to indicate what that solution was so people searching the archives can learn from your question. Was it to set the kable option? options(knitr.kable.NA = '-')  On October 19, 2019 12:50:20 PM PDT, Felipe Carrillo wrote: >You are correct. I didnt explain well and fail

Re: [R] Tinn-R project: new version (6.01.01.03) released

Josè Sent from Yahoo Mail on Android On Mon, Dec 23, 2019 at 12:15 PM, Abby Spurdle wrote: Hi Jose,Same here, I use tinn-R on a daily basis..thanks for the update and have a merry christmas That's awesome. I used Tinn-R, back in 2006, when I starting learning nontrivial R programming

Re: [R] [External Email] Re: [External] Re: access for free more than 500 essential Springer Nature textbooks

They can be downladed. I saved two of them to my desktop as pdf earlier. Sent from Yahoo Mail on Android On Fri, May 22, 2020 at 10:35 PM, Mark Leeds wrote: Hi: I'm not sure about the other link that was sent because I didn't try it  but, in the case of the link that I sent, you can obtain

Re: [R] Arranging ggplot2 objects with ggplotGrob()

What about cowplot? https://cran.r-project.org/web/packages/cowplot/vignettes/introduction.html On Friday, July 24, 2020, 11:51:17 AM PDT, H wrote: On 07/24/2020 02:03 PM, Jeff Newmiller wrote: > The set of people interested in helping when you supply a minimal > reproducible example i

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