Re: [R] ncdf4: Why are NAs converted to _FillValue when saving?

2017-08-14 Thread David W. Pierce
ogie und Umwelt > > Reckenholzstrasse 191, 8046 Zürich > Tel. 058 468 75 11 > Fax 058 468 72 01 > raphael.fel...@agroscope.admin.ch<mailto:raphael.fel...@agroscope.admin.ch > > > www.agroscope.ch<http://www.agroscope.ch/> > > > [[alternative H

Re: [R] extend limited dimension in netcdf

2017-09-07 Thread David W. Pierce
a mistake.​ ​Regards, --Dave​ -- David W. Pierce Division of Climate, Atmospheric Science, and Physical Oceanography Scripps Institution of Oceanography, La Jolla, California, USA (858) 534-8276 (voice) / (858) 534-8561 (fax)dpie...@ucsd.edu

Re: [R] Showing error when trying to open a netcdf file using 'ncdf' package in R

2015-01-12 Thread David W. Pierce
the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- David W. Pierce Division of Climate, Atmospheric Science, and Physical Oceanography Scripps Institution of Oceanography, La J

Re: [R] Problems trying to make a time series using NetCDF file

2019-03-16 Thread David W. Pierce
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >

Re: [R] ncdf size error

2014-09-15 Thread David W. Pierce
not allowed in > define mode. This happens when I try to create.ncdf() a file with more than > 13 variables. I think is a problem of memory size. What would you recommend? > Any help will be appreciated Hi Hernan, can you supply an example that shows the problem? Regards, --Dave --

Re: [R] ncdf size error

2014-09-16 Thread David W. Pierce
ttp://www.public.asu.edu/~hamoreno/ > > > From: davidwilliampie...@gmail.com on behalf > of David W. Pierce > Sent: Monday, September 15, 2014 7:00 PM > To: Hernan A. Moreno Ramirez > Cc: r-help@r-project.org > Subject: Re: [R] ncd

Re: [R] ncdf size error

2014-09-16 Thread David W. Pierce
create("/media/D/output.nc",list(varT2, varQ2, varQVAPOR, > varQCLOUD, varPSFC, varW10, varW, varVEGFRA, varMAXVEGFRA, varTPREC, > varFRAC_FROZ_PREC, varSWDOWN, varGLW, varPBLH, varTSLB)) > > Error in R_nc4_enddef: NetCDF: One or more variable sizes violate format > constra

Re: [R] Unexpected values obtained when reading in data using ncdf and ncdf4

2016-04-22 Thread David W. Pierce
with the nc files if I make them available privately? > > Thanks very much in advance! > Louise > > > > > > [[alternative HTML version deleted]] > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and mo

Re: [R] Runtime error using ncdf

2013-08-17 Thread David W. Pierce
tps://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help> > PLEASE do read the posting guide http://www.R-project.org/** > posting-guide.html <http://www.R-project.org/posting-guide.html> > and provide commented, minimal, self-contained, repro

Re: [R] ncdf4 installation problem: undefined symbol [SEC=UNCLASSIFIED]

2013-02-05 Thread David W. Pierce
d object '/usr/lib64/R/library/ncdf4/libs/ncdf4.so': > /usr/lib64/R/library/ncdf4/libs/ncdf4.so: undefined symbol: > nc_inq_var_deflate > Error: loading failed > Execution halted > ERROR: loading failed > * removing '/usr/lib64/R/library/ncdf4' > > Than

Re: [R] install error - Netcdf library (linux)

2013-03-07 Thread David W. Pierce
] > ncdf.c: In function ‘R_nc4_inq_format’: > ncdf.c:1364:2: warning: implicit declaration of function ‘nc_inq_format’ > [-Wimplicit-function-declaration] > ncdf.c:1374:8: error: ‘NC_FORMAT_CLASSIC’ undeclared (first use in this > function) > ncdf.c:1378:8: error: ‘NC_FORMAT_64BIT

Re: [R] Any solution to have RnetCDF, ncdf or ncdf4 in R 3.1 ?

2014-04-06 Thread David W. Pierce
tallation of package 'ncdf4' had non-zero exit status > > Sincerely, > > Marc Girondot > > __ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-p

Re: [R] Missval in netCDF and its handling by the ncdf package

2014-02-06 Thread David W. Pierce
> Various questions about missing values in the R ncdf package, and how they are > handled if the file lacks the standard "_FillValue" attribute. Hi Andre, It sounds like the fundamental problem is that your data files are using a missval, but that fact is not recorded in the file's metadata as a

Re: [R] Missval in netCDF and its handling by the ncdf package

2014-02-07 Thread David W. Pierce
ocumentation of > open.ncdf? > Hi Andre, The ncdf package has been deprecated for many years, so I don't think changing its documentation is practical at this point. However, I will add information to this effect to the ncdf4 package, which is the ncdf package's replacement. Regard

Re: [R] big difference between ncdf and RNetCDF ?

2013-09-17 Thread David W. Pierce
to their functions). I ask because > I will give some advice on ncdf and R to a group of people highlighting > some of the (possible) differences. > > > Thanks a lot > Jannis > -- David W. Pierce Division of Climate, Atmospheric Science, and Physical Oceanography Scripps Institu

Re: [R] [netcdfgroup] [ncdf4] error converting GEIA data to netCDF

2012-08-28 Thread David W. Pierce
delssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > 1352 Lighthouse Avenue > Pacific Grove, CA 93950-2097 > > e-mail: roy.mendelss...@noaa.gov (Note new e-mail address) > voice: (831)

Re: [R] [netcdfgroup] [ncdf4] error converting GEIA data to netCDF

2012-08-28 Thread David W. Pierce
ers: they provide opportunities to add in more explanatory text for errors you never would have thought of. :) --Dave -- David W. Pierce Division of Climate, Atmospheric Science, and Physical Oceanography Scripps Institution of Oceanography, La Jolla, California, USA (858) 534-8276 (voice