[R] RCurl question

2010-07-03 Thread Brad McNeney
tions). The cgi script has apparently received the html_output=on information though. I get the same results on Linux and Windows -- sessionInfo() for both follows. Any pointers appreciated. Thanks, Brad --- Brad McNeney Statistics and Actuarial Science Simon Fraser University Linux: &g

Re: [R] Cox Proportional Models and Haplotypes

2010-10-29 Thread Brad McNeney
oxph with augdat as the data frme and wts as the weights. See ?pre.hapassoc for details on accepted formats for the SNP data. Brad -- Brad McNeney Statistics and Actuarial Science Simon Fraser University On Tue, Oct 26, 2010 at 12:01 PM, David Winsemius wrote: > > On Oct 26, 2010, at 8:57

Re: [R] Hardy Weinberg Case Control Test in gap R package

2011-07-20 Thread Brad McNeney
As an alternative, you could try the HWExact function in the GWASExactHW package. (Haven't tried it myself though ...). Brad - Original Message - > From: "Jim Silverton" > To: r-help@r-project.org > Sent: Tuesday, 12 July, 2011 8:33:54 PM > Subject: Re: [R] Hardy Weinberg Case Control T

Re: [R] Any R package about COALESCENT THEORY/GENEOLOGICAL TREES??

2008-07-11 Thread Brad McNeney
It's not clear what you want to do with coalescent theory, but you may find Jonathan Marchini's popgen package useful. If not, you may find what you are looking for in one of the other packages listed in the Genetics task view. You can learn about the R-C interface in Section 5 of the "Writing R E